Structural Optimisation: Biomechanics of the Femur

A preliminary iterative 3D meso-scale structural model of the femur was developed, in which bar and shell elements were used to represent trabecular and cortical bone respectively. The cross-sectional areas of the bar elements and the thickness values of the shell elements were adjusted over successive iterations of the model based on a target strain stimulus, resulting in an optimised construct. The predicted trabecular architecture, and cortical thickness distribution showed good agreement with clinical observations, based on the application of a single leg stance load case during gait. The benefit of using a meso-scale structural approach in comparison to micro or macro-scale continuum approaches to predictive bone modelling was achievement of the symbiotic goals of computational efficiency and structural description of the femur.Comment: Accepted by Engineering and Computational Mechanics (Proceedings of the ICE

A Group-1 Grass Pollen Allergen Influences the Outcome of Pollen Competition in Maize

Worldwide, 400 million people suffer from hay fever and seasonal asthma. The major causative agents of these allergies are pollen specific proteins called the group-1 grass pollen allergens. Although details of their antigenicity have been studied for 40 years with an eye towards immunotherapy, their function in the plant has drawn scant attention. Zea m 1 constitutes a class of abundant grass pollen allergens coded for by several genes that loosen the walls of grass cells, including the maize stigma and style. We have examined the impact of a transposon insertion into one of these genes (EXPB1, the most abundant isoform of Zea m 1) on the production of Zea m 1 protein, pollen viability, and pollen tube growth, both in vitro and in vivo. We also examined the effect of the insertional mutation on the competitive ability of the pollen by experimentally varying the sizes of the pollen load deposited onto stigmas using pollen from heterozygous plants and then screening the progeny for the presence of the transposon using PCR. We found that the insertional mutation reduced the levels of Zea m 1 in maize pollen, but had no effect on pollen viability, in vitro pollen tube growth or the proportion of progeny sired when small pollen loads are deposited onto stigmas. However, when large pollen loads are deposited onto the stigmas, the transposon mutation is vastly underrepresented in the progeny, indicating that this major pollen allergen has a large effect on pollen tube growth rates in vivo, and plays an important role in determining the outcome of the pollen-pollen competition for access to the ovules. We propose that the extraordinary abundance (4% of the extractable protein in maize pollen) of this major pollen allergen is the result of selection for a trait that functions primarily in providing differential access to ovules

Description of understory development in a tree plantation with a new method of data structuring

During May and June, 1974, relevés were obtained from 30 plantation stands in the Saginaw Forest in southeastern Michigan. The canopy trees in these plantations were planted between 1904 and 1938. The understory has developed naturally over the years. The forest plantations offer opportunities for study of the effects of the canopy on the structure and species composition of the understory.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/43888/1/11258_2004_Article_BF00228485.pd

The Nandewar Volcano

The Miocene Nandewar Volcano in north-eastern New South Wales is composed of a suite of transitional alkaline eruptives and minor associated intrusives. The volcanics include minor hawaiites but are dominated by a mildly potassic lineage extending from hy-normative trachyandesites to comendites via tristanites and mafic to peralkaline trachytes. Although the trachyandesites, tristanites and trachytes (the main shield-forming sequence) are collectively the most abundant volcanics, alkali rhyolites comprise the most voluminous 'evolved' eruptive type. Peralkaline trachytes and comendites are relatively insignificant volumetrically. Olivine, Ca-rich pyroxene and amphibole display marked decreases in their 100 Mg/(Mg+Fe) ratios in the transition from trachyandesite to comendite, reflecting variation in host-rock compositions. The presence of tschermakitic Ca-rich pyroxenes and aluminian bronzite megacrysts in several trachyandesites indicates that their hosts experienced intratelluric crystallization at elevated pressures (~6 to 8 kb). Some plagioclase, olivine and titanomagnetite phenocrysts may also represent moderate-pressure cognate precipitates. Groundmass pyroxenes in some trachytes and comendites may be strongly acmitic, and this reflects the peralkaline character of those melts. Titanomagnetite is the dominant Fe-Ti oxide phase throughout the series, and only occasionally does it coexist with ilmenite. Fe-Ti oxide compositional data indicate that magmas spanning the spectrum trachyandesite to comendite generally crystallized under conditions of decreasing T and ƒo₂ which were broadly parallel with the FMQ synthetic buffer curve. However, some alkali rhyolites appear to have crystallized under significantly more oxidizing conditions. Crystallization of aenigmatite in the groundmass of peralkaline trachytes and comendites also reflects relatively strongly reducing conditions in the more 'evolved' variants and ns-bearing melts. In several specimens the presence of aenigmatite rimming titanomagnetite and ilmenite microphenocrysts provides some support for the existence of a 'no-oxide' field in T-ƒo₂ space

Leaf trichomes affect caterpillar feeding in an instar-specific manner

Leaf trichomes play well-established roles in defense against insect herbivores, both as a physical barrier that impedes herbivore movement and by mediating chemical defenses. However, little work has examined how different trichome types influence herbivory by herbivores at different stages of development. We examined whether caterpillar instar and trichome type (glandular or non-glandular) affected the ability of the specialist herbivore caterpillar Manduca sexta to initiate feeding on 11 Solanaceous species exhibiting variation in the density and type of leaf trichomes. Our results suggest that non-glandular trichomes are far more effective than glandular trichomes in deterring the initiation of feeding by first- and second-instar caterpillars. Meanwhile, neither glandular nor non-glandular trichomes significantly affected the ability of third-instar caterpillars to commence feeding. These findings suggest that while non-glandular trichomes deter feeding initiation by early instar caterpillars, the contribution of both trichomes on later instars may depend on effects after feeding initiation

Herbivory and inbreeding affect growth, reproduction, and resistance in the rhizomatous offshoots of Solanum carolinense (Solanaceae)

Resource sharing within clonal plant networks can occur via the translocation of water, nutrients, and photoassimilates through rhizomes and stolons. Similar mechanisms may mediate the sharing of information (e.g., about herbivory or other environmental stressors) among ramets via molecular or biochemical signals. The storage of such information in belowground structures could facilitate the transmission of appropriate phenotypic responses across growing seasons in perennial species. However, few previous studies have explored the potential transfer of ecologically relevant information within such networks. This study addresses the effects of foliar herbivory and belowground overwintering on the growth and flowering, physical defenses, and herbivore resistance in the clonally spreading species Solanum carolinense L. (Solanaceae). We used rhizomes from inbred and outbred plants that were repeatedly exposed to feeding damage by Manduca sexta L. (Sphingidae) caterpillars and rhizomes from undamaged control plants. These rhizomes were either planted immediately or exposed to overwintering conditions and allowed to produce new ramets (rhizomatous offshoots). We then assessed offshoot emergence, flowering, physical defense traits, and herbivore performance. Relative to controls, offshoots of herbivore-damaged plants exhibited greater spine and trichome densities, and reduced performance of M. sexta larvae. However, they also emerged and flowered significantly later, and produced fewer flowers than offshoots of undamaged plants. Inbreeding also negatively affected offshoot emergence, flowering, trichome production, and herbivore resistance. These effects of parental herbivory were more pronounced in outbred offshoots, indicating that inbreeding may compromise the trans-seasonal induction of plant defenses. Finally, exposure to overwintering conditions increased trichome production and reduced caterpillar performance on offshoots. Together, these results show that induced defenses can be transmitted through rhizomes and affect offshoot growth, flowering, defensive traits, and herbivore resistance. They also document fitness-related costs associated with defense induction in offshoots and suggest that the transfer of defenses across seasons can be compromised by inbreeding

Understanding pregnancy planning in a low-income country setting: validation of the London measure of unplanned pregnancy in Malawi

This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.Background: The London Measure of Unplanned Pregnancy (LMUP) is a new and psychometrically valid measure of pregnancy intention that was developed in the United Kingdom. An improved understanding of pregnancy intention in low-income countries, where unintended pregnancies are common and maternal and neonatal deaths are high, is necessary to inform policies to address the unmet need for family planning. To this end this research aimed to validate the LMUP for use in the Chichewa language in Malawi.Methods: Three Chichewa speakers translated the LMUP and one translation was agreed which was back-translated and pre-tested on five pregnant women using cognitive interviews. The measure was field tested with pregnant women who were recruited at antenatal clinics and data were analysed using classical test theory and hypothesis testing.Results: 125 women aged 15-43 (median 23), with parities of 1-8 (median 2) completed the Chichewa LMUP. There were no missing data. The full range of LMUP scores was captured. In terms of reliability, the scale was internally consistent (Cronbach's alpha = 0.78) and test-retest data from 70 women showed good stability (weighted Kappa 0.80). In terms of validity, hypothesis testing confirmed that unmarried women (p = 0.003), women who had four or more children alive (p = 0.0051) and women who were below 20 or over 29 (p = 0.0115) were all more likely to have unintended pregnancies. Principal component analysis showed that five of the six items loaded onto one factor, with a further item borderline. A sensitivity analysis to assess the effect of the removal of the weakest item of the scale showed slightly improved performance but as the LMUP was not significantly adversely affected by its inclusion we recommend retaining the six-item score.Conclusion: The Chichewa LMUP is a valid and reliable measure of pregnancy intention in Malawi and can now be used in research and/or surveillance. This is the first validation of this tool in a low-income country, helping to demonstrate that the concept of pregnancy planning is applicable in such a setting. Use of the Chichewa LMUP can enhance our understanding of pregnancy intention in Malawi, giving insight into the family planning services that are required to better meet women's needs and save lives. © 2013 Hall et al.; licensee BioMed Central Ltd.Dr Hall’s Wellcome Trust Research Training Fellowship, grant number 097268/Z/11/Z

Exact sampling from non-attractive distributions using summary states

Propp and Wilson's method of coupling from the past allows one to efficiently generate exact samples from attractive statistical distributions (e.g., the ferromagnetic Ising model). This method may be generalized to non-attractive distributions by the use of summary states, as first described by Huber. Using this method, we present exact samples from a frustrated antiferromagnetic triangular Ising model and the antiferromagnetic q=3 Potts model. We discuss the advantages and limitations of the method of summary states for practical sampling, paying particular attention to the slowing down of the algorithm at low temperature. In particular, we show that such a slowing down can occur in the absence of a physical phase transition.Comment: 5 pages, 6 EPS figures, REVTeX; additional information at http://wol.ra.phy.cam.ac.uk/mackay/exac

Selecting patients for randomized trials: a systematic approach based on risk group

BACKGROUND: A key aspect of randomized trial design is the choice of risk group. Some trials include patients from the entire at-risk population, others accrue only patients deemed to be at increased risk. We present a simple statistical approach for choosing between these approaches. The method is easily adapted to determine which of several competing definitions of high risk is optimal. METHOD: We treat eligibility criteria for a trial, such as a smoking history, as a prediction rule associated with a certain sensitivity (the number of patients who have the event and who are classified as high risk divided by the total number patients who have an event) and specificity (the number of patients who do not have an event and who do not meet criteria for high risk divided by the total number of patients who do not have an event). We then derive simple formulae to determine the proportion of patients receiving intervention, and the proportion who experience an event, where either all patients or only those at high risk are treated. We assume that the relative risk associated with intervention is the same over all choices of risk group. The proportion of events and interventions are combined using a net benefit approach and net benefit compared between strategies. RESULTS: We applied our method to design a trial of adjuvant therapy after prostatectomy. We were able to demonstrate that treating a high risk group was superior to treating all patients; choose the optimal definition of high risk; test the robustness of our results by sensitivity analysis. Our results had a ready clinical interpretation that could immediately aid trial design. CONCLUSION: The choice of risk group in randomized trials is usually based on rather informal methods. Our simple method demonstrates that this decision can be informed by simple statistical analyses