6 research outputs found
Topological Deep Learning: Going Beyond Graph Data
Topological deep learning is a rapidly growing field that pertains to the
development of deep learning models for data supported on topological domains
such as simplicial complexes, cell complexes, and hypergraphs, which generalize
many domains encountered in scientific computations. In this paper, we present
a unifying deep learning framework built upon a richer data structure that
includes widely adopted topological domains.
Specifically, we first introduce combinatorial complexes, a novel type of
topological domain. Combinatorial complexes can be seen as generalizations of
graphs that maintain certain desirable properties. Similar to hypergraphs,
combinatorial complexes impose no constraints on the set of relations. In
addition, combinatorial complexes permit the construction of hierarchical
higher-order relations, analogous to those found in simplicial and cell
complexes. Thus, combinatorial complexes generalize and combine useful traits
of both hypergraphs and cell complexes, which have emerged as two promising
abstractions that facilitate the generalization of graph neural networks to
topological spaces.
Second, building upon combinatorial complexes and their rich combinatorial
and algebraic structure, we develop a general class of message-passing
combinatorial complex neural networks (CCNNs), focusing primarily on
attention-based CCNNs. We characterize permutation and orientation
equivariances of CCNNs, and discuss pooling and unpooling operations within
CCNNs in detail.
Third, we evaluate the performance of CCNNs on tasks related to mesh shape
analysis and graph learning. Our experiments demonstrate that CCNNs have
competitive performance as compared to state-of-the-art deep learning models
specifically tailored to the same tasks. Our findings demonstrate the
advantages of incorporating higher-order relations into deep learning models in
different applications
Severity and mortality prediction models to triage Indian COVID-19 patients.
As the second wave in India mitigates, COVID-19 has now infected about 29 million patients countrywide, leading to more than 350 thousand people dead. As the infections surged, the strain on the medical infrastructure in the country became apparent. While the country vaccinates its population, opening up the economy may lead to an increase in infection rates. In this scenario, it is essential to effectively utilize the limited hospital resources by an informed patient triaging system based on clinical parameters. Here, we present two interpretable machine learning models predicting the clinical outcomes, severity, and mortality, of the patients based on routine non-invasive surveillance of blood parameters from one of the largest cohorts of Indian patients at the day of admission. Patient severity and mortality prediction models achieved 86.3% and 88.06% accuracy, respectively, with an AUC-ROC of 0.91 and 0.92. We have integrated both the models in a user-friendly web app calculator, https://triage-COVID-19.herokuapp.com/, to showcase the potential deployment of such efforts at scale
ICML 2023 topological deep learning challenge. Design and results
This paper presents the computational challenge on topological deep learning that was hosted within the ICML 2023 Workshop on Topology and Geometry in Machine Learning. The competition asked participants to provide open-source implementations of topological neural networks from the literature by contributing to the python packages TopoNetX (data processing) and TopoModelX (deep learning). The challenge attracted twenty-eight qualifying submissions in its two-month duration. This paper describes the design of the challenge and summarizes its main finding
ICML 2023 Topological Deep Learning Challenge:Design and Results
This paper presents the computational challenge on topological deep learning that was hosted within the ICML 2023 Workshop on Topology and Geometry in Machine Learning. The competition asked participants to provide open-source implementations of topological neural networks from the literature by contributing to the python packages TopoNetX (data processing) and TopoModelX (deep learning). The challenge attracted twenty-eight qualifying submissions in its two month duration. This paper describes the design of the challenge and summarizes its main findings.</p