Integrating habitat- and species-based perspectives for wetland conservation in lowland agricultural landscapes

Wetlands are among the most endangered ecosystems worldwide with multiple direct and indirect stressors, especially in human-altered areas like intensive agricultural landscapes. Conservation management and eforts often focus on species diversity and charismatic taxa, but scarcely consider habitats. By focusing on a complex formed by 107 permanent wetlands at 18 Natura 2000 sites in the Emilia-Romagna region (northern Italy), the patterns of habitats of conservation concern were investigated and the concordance with threatened species patterns was analysed. Wetlands were characterised in terms of morphology, connectivity, land use and management as drivers of assemblage and richness patterns of habitats. Our results showed a strong concordance between the distribution and richness patterns of both habitats and threatened taxa (birds, mammals, amphibians, reptiles, fsh, invertebrates, and plants). Thus, habitats seem an efective proxy of species patterns. The variables related with perimeter, environmental heterogeneity and presence of water bodies were the most important ones associated with habitat richness patterns. The presence of aquatic systems (measured as the percentage of wetland area occupied by an aquatic surface) and their position in the hydrographic network were associated mostly with habitats distribution. Low richness wetlands (in habitat terms) were not complementary as no new habitat types were supported. The results stressed the relevance of wetlands with wide water body perimeters composed of diverse systems as being key for biodiversity conservation in a simplifed agricultural matrix. Integrating habitat- and species-based perspectives seems a promising feld and may provide a rapid assessment tool to acquire efective information for wetlands conservation and assessment

Supplementary Information Files for 'Integrating habitat- and species-based perspectives for wetland conservation in lowland agricultural landscapes'

Three figures and a pdf document of supplementary information for the article 'Integrating habitat- and species-based perspectives for wetland conservation in lowland agricultural landscapes'Abstract:Wetlands are among the most endangered ecosystems worldwide with multiple direct and indirect stressors, especially in human-altered areas like intensive agricultural landscapes. Conservation management and efforts often focus on species diversity and charismatic taxa, but scarcely consider habitats. By focusing on a complex formed by 107 permanent wetlands at 18 Natura 2000 sites in the Emilia-Romagna region (northern Italy), the patterns of habitats of conservation concern were investigated and the concordance with threatened species patterns was analysed. Wetlands were characterised in terms of morphology, connectivity, land use and management as drivers of assemblage and richness patterns of habitats. Our results showed a strong concordance between the distribution and richness patterns of both habitats and threatened taxa (birds, mammals, amphibians, reptiles, fish, invertebrates, and plants). Thus, habitats seem an effective proxy of species patterns. The variables related with perimeter, environmental heterogeneity and presence of water bodies were the most important ones associated with habitat richness patterns. The presence of aquatic systems (measured as the percentage of wetland area occupied by an aquatic surface) and their position in the hydrographic network were associated mostly with habitats distribution. Low richness wetlands (in habitat terms) were not complementary as no new habitat types were supported. The results stressed the relevance of wetlands with wide water body perimeters composed of diverse systems as being key for biodiversity conservation in a simplified agricultural matrix. Integrating habitat- and species-based perspectives seems a promising field and may provide a rapid assessment tool to acquire effective information for wetlands conservation and assessment.</div

biomonitoR: an R package for managing ecological data and calculating biomonitoring indices

The monitoring of biological indicators is required to assess the impacts of environmental policies, compare ecosystems and guide management and conservation actions. However, the growing availability of ecological data has not been accompanied by concomitant processing tools able to facilitate data handling and analysis. Multiple common challenges limit the usefulness of biomonitoring information across ecosystems and biological groups. Biomonitoring data analysis is currently constrained by time-consuming steps for data preparation and a data processing environment with limited integration in terms of software, biological groups, and protocols. We introduce biomonitoR, a package for the R programming language that addresses technical challenges for the management of ecological data and metrics calculation. biomonitoR implements most of the biological indices currently used or proposed in different fields of ecology and water resource management. Its combination of customizable functions aims to support a transferable and comprehensive biomonitoring workflow in a user-friendly environment. biomonitoR represents a versatile toolbox with five main assets: (i) it checks taxonomic information against reference datasets allowing for customization of trait and sensitivity scores; (ii) it supports heterogeneous taxonomic resolution allowing computations at multiple taxonomic levels; (iii) it calculates multiple biological indices, including metrics for both broad and stressor-specific ecological assessments; (iv) it enables user-friendly data visualization, helping both decision-making processes and data interpretation; and (v) it allows working with an interactive web application straight from R. Overall, biomonitoR can benefit the wide biomonitoring community, including environmental private consultants, ecologists and natural resource managers