Data_Sheet_1_Concerted Metabolic Shifts Give New Insights Into the Syntrophic Mechanism Between Propionate-Fermenting Pelotomaculum thermopropionicum and Hydrogenotrophic Methanocella conradii.XLSX

<p>Microbial syntrophy is a thermodynamically-based cooperation between microbial partners that share the small amounts of free energy for anaerobic growth. To gain insights into the mechanism by which syntrophic microorganisms coordinate their metabolism, we constructed cocultures of propionate-oxidizing Pelotomaculum thermopropionicum and hydrogenotrophic Methanocella conradii and compared them to monocultures. Transcriptome analysis was performed on these cultures using strand-specific mRNA sequencing (RNA-Seq). The results showed that in coculture both P. thermopropionicum and M. conradii significantly upregulated the expression of genes involved in catabolism but downregulated those for anabolic biosynthesis. Specifically, genes coding for the methylmalonyl-CoA pathway in P. thermopropionicum and key genes for methanogenesis in M. conradii were substantially upregulated in coculture compared to monoculture. The putative flavin-based electron bifurcation/confurcation systems in both organisms were also upregulated in coculture. Formate dehydrogenase encoding genes in both organisms were markedly upregulated, indicating that formate was produced and utilized by P. thermopropionicum and M. conradii, respectively. The inhibition of syntrophic activity by formate and 2-bromoethanesulphonate (2-BES) but not H₂/CO₂ also suggested that formate production was used by P. thermopropionicum for the recycling of intracellular redox mediators. Finally, flagellum-induced signal transduction and amino acids exchange was upregulated for syntrophic interactions. Together, our study suggests that syntrophic organisms employ multiple strategies including global metabolic shift, utilization of electron bifurcation/confurcation and employing formate as an alternate electron carrier to optimize their metabolisms for syntrophic growth.</p

Table_1_Concerted Metabolic Shifts Give New Insights Into the Syntrophic Mechanism Between Propionate-Fermenting Pelotomaculum thermopropionicum and Hydrogenotrophic Methanocella conradii.PDF

<p>Microbial syntrophy is a thermodynamically-based cooperation between microbial partners that share the small amounts of free energy for anaerobic growth. To gain insights into the mechanism by which syntrophic microorganisms coordinate their metabolism, we constructed cocultures of propionate-oxidizing Pelotomaculum thermopropionicum and hydrogenotrophic Methanocella conradii and compared them to monocultures. Transcriptome analysis was performed on these cultures using strand-specific mRNA sequencing (RNA-Seq). The results showed that in coculture both P. thermopropionicum and M. conradii significantly upregulated the expression of genes involved in catabolism but downregulated those for anabolic biosynthesis. Specifically, genes coding for the methylmalonyl-CoA pathway in P. thermopropionicum and key genes for methanogenesis in M. conradii were substantially upregulated in coculture compared to monoculture. The putative flavin-based electron bifurcation/confurcation systems in both organisms were also upregulated in coculture. Formate dehydrogenase encoding genes in both organisms were markedly upregulated, indicating that formate was produced and utilized by P. thermopropionicum and M. conradii, respectively. The inhibition of syntrophic activity by formate and 2-bromoethanesulphonate (2-BES) but not H₂/CO₂ also suggested that formate production was used by P. thermopropionicum for the recycling of intracellular redox mediators. Finally, flagellum-induced signal transduction and amino acids exchange was upregulated for syntrophic interactions. Together, our study suggests that syntrophic organisms employ multiple strategies including global metabolic shift, utilization of electron bifurcation/confurcation and employing formate as an alternate electron carrier to optimize their metabolisms for syntrophic growth.</p

Estimation of wheelset natural vibration characteristics based on transfer matrix method with various elastic beam models

The elastic vibration of the wheelset is a potential factor inducing wheel-rail defects. It is important to understand the natural vibration characteristics of the flexible wheelset for slowing down the defect growth. To estimate the elastic free vibration of the railway wheelset with the multidiameter axle, the transfer matrix method (TMM) is applied. The transfer matrices of four types of elastic beam models are derived including the Euler-Bernoulli beam, Timoshenko beam, elastic beam without mass and shearing stiffness, and massless elastic beam with shearing stiffness. For each type, the simplified model and detailed models of the flexible wheelset are developed. Both bending and torsional modes are compared with that of the finite element (FE) model. For the wheelset bending modes, if the wheel axle is modelled as the Euler-Bernoulli beam and Timoshenko beam, the natural frequencies can be reflected accurately, especially for the latter one. Due to the lower solving accuracy, the massless beam models are not applicable for the analysis of natural characteristics of the wheelset. The increase of the dividing segment number of the flexible axle is helpful to improve the modal solving accuracy, while the computation effort is almost kept in the same level. For the torsional vibration mode, it mainly depends on the axle torsional stiffness and wheel inertia rather than axle torsional inertia

Image_1_Concerted Metabolic Shifts Give New Insights Into the Syntrophic Mechanism Between Propionate-Fermenting Pelotomaculum thermopropionicum and Hydrogenotrophic Methanocella conradii.PDF

<p>Microbial syntrophy is a thermodynamically-based cooperation between microbial partners that share the small amounts of free energy for anaerobic growth. To gain insights into the mechanism by which syntrophic microorganisms coordinate their metabolism, we constructed cocultures of propionate-oxidizing Pelotomaculum thermopropionicum and hydrogenotrophic Methanocella conradii and compared them to monocultures. Transcriptome analysis was performed on these cultures using strand-specific mRNA sequencing (RNA-Seq). The results showed that in coculture both P. thermopropionicum and M. conradii significantly upregulated the expression of genes involved in catabolism but downregulated those for anabolic biosynthesis. Specifically, genes coding for the methylmalonyl-CoA pathway in P. thermopropionicum and key genes for methanogenesis in M. conradii were substantially upregulated in coculture compared to monoculture. The putative flavin-based electron bifurcation/confurcation systems in both organisms were also upregulated in coculture. Formate dehydrogenase encoding genes in both organisms were markedly upregulated, indicating that formate was produced and utilized by P. thermopropionicum and M. conradii, respectively. The inhibition of syntrophic activity by formate and 2-bromoethanesulphonate (2-BES) but not H₂/CO₂ also suggested that formate production was used by P. thermopropionicum for the recycling of intracellular redox mediators. Finally, flagellum-induced signal transduction and amino acids exchange was upregulated for syntrophic interactions. Together, our study suggests that syntrophic organisms employ multiple strategies including global metabolic shift, utilization of electron bifurcation/confurcation and employing formate as an alternate electron carrier to optimize their metabolisms for syntrophic growth.</p

PSNR (dB), SSIM and running time (s) results of different methods on test images.

<p>PSNR (dB), SSIM and running time (s) results of different methods on test images.</p

The reconstructed results of different methods on Brain image from noisy and undersampled Fourier data (noise level: 30 dB and sampling ratio: 20%).

<p>(A) Original image; (B) TV-FISTA result; (C) HDTV2-MM result; (D) HDTV2-FBS result; (E) the zoomed version of region marked by the white box in original image; (F) the zoomed version of TV-FISTA result; (G) the zoomed version of HDTV2-MM result; (H) the zoomed version of HDTV2-FBS result.</p

The convergence curve of PSNR and relative error results versus iterations corresponding to the reconstructed example shown in Fig 3.

<p>(A) PSNR versus iterations; (B) Relative error versus iterations.</p

The FBS algorithm for HDTV2-based image reconstruction.

<p>The FBS algorithm for HDTV2-based image reconstruction.</p

The reconstructed results of different methods on CIL 240 image from noisy and undersampled Fourier data (noise level: 30 dB and sampling ratio: 30%).

<p>(A) Original image; (B) TV-FISTA result; (C) HDTV2-MM result; (D) HDTV2-FBS result; (E) the residual of TV-FISTA result; (F) the residual of HDTV2-MM result; (G) the residual of HDTV2-FBS result.</p

The convergence curve of the cost of objective function and PSNR results versus iterations corresponding to the reconstructed example shown in Fig 1.

<p>(A) Cost versus iterations; (B) PSNR versus iterations.</p