Bioturbation experiments in the Venice Lagoon

Short experiments (14–21 days) were carried out during autumn 1998 and spring 1999 at one selected site of the Venice Lagoon to measure bioturbation activities and mixing rates, as well as to obtain quantitative information on benthos functionality. Fluorescent sediment particles (luminophores, 63–350 μm) were introduced as pulse inputs at the sediment surface. The concentration–depth profiles of the tracer were simulated with a new advection– diffusion–non local model applied under non-steady state conditions. This allowed the quantification of the mixing parameters associated with different mechanisms: biodiffusion (Db), bioadvection (W) and non-local mixing (Ke,z1, z2). A parameter RS (removed sediment) was also calculated to account for the flux of sediment due to nonlocal transport. Results show that bioturbation was dominated by biodiffusion in autumn and by bioadvection in spring. Mean mixing parameters Db, W, and RS changed from 3.09 to 0.87 cm2 y−1, from 0.93 to 15.50 y−1 and from 5.85 to 7.79 g cm−2 y−1, respectively

Modelling Environmental Fate and Transport of POPs and Metal Usig the Fugacity/Aquivalence approach: Two Acquatic Environments as a Case Study.

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Identifying sources and pathways of persistant organic pollutants in aquatic environments

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Metals in Sediment Cores from Nine Coastal Lagoons in Central Vietnam

Problem statement: After being dramatically hit by war events, Vietnam is presently experiencing a huge economical and social development. However, very few data, relative to pollution levels and trends, are available for the correct management of critical areas such as coastal lagoons, where many economical activities are linked to high value environmental features. Approach: A set of sediment cores from nine coastal lagoons of central Vietnam (Lang Co, Truong Giang, An Khe, Nuoc Man, Nuoc Ngot, Thi Nai, O Loan, Thuy Trieu and Dam Nai) were sampled in 2008 and analyzed to assess metal and (Al, Cd, Cr, Cu, Fe, Hg, Li, Mn, Ni, Pb, V, U and Zn) and As levels and historical trends. Results: Concentrations are generally low, with the exception of As, which often exceeds ERL guidelines and Ni that does the same at O Loan. In some cases, concentrations-depth profiles account for recent increasing trends but surficial values are still low when compared to both international guidelines and polluted sediments all around the world. Sediment grain size seems to affect the depth distribution of a number of metals and when normalized to the content of silt and clay, values are particularly high at Dam Nai and Thi Nai, due to the very coarse composition of surficial sediments. Conclusion: Metal concentrations in lagoon sediments derive from the composition of rocks and soils in the watersheds. However, recent increasing trends need for further monitoring

PCDD/Fs in sediments of Central Vietnam coastal lagoons: In search of TCDD

Samples from nine Central Vietnam coastal lagoons, together with three soils and sediments collected in 24 two freshwater reservoirs of the Thua Thien-Hué province, were analysed for polychlorinated dibenzo-p- 25 dioxins and dibenzofurans (PCDD/Fs). Total concentrations are low, from 192 to 2912 pg g1 and depth 26 profiles in Tam Giang-Cau Hai (TG-CH) sediment cores show only minor changes over time in PCDD/F 27 input and composition. Octachloro dibenzo-p-dioxin (OCDD) is the prevailing congener (approximately 28 90%), indicating combustion as the main PCDD/F source to these coastal systems, whereas natural forma- 29 tion might be partly responsible for the presence at depth. 2,3,7,8-Tetrachloro dibenzo-p-dioxin (TCDD), 30 largely sprayed together with Agent Orange over the study areas during the war (1961–1971), is absent 31 or very low. This result supports the hypothesis of strong degradation soon after spraying. Multivariate 32 statistical analyses account for the presence of local, short-range sources as observed in the northern part 33 of the TG-CH lagoon

Fusarium: more than a node or a foot-shaped basal cell

Recent publications have argued that there are potentially serious consequences for researchers in recognising distinct genera in the terminal fusarioid clade of the family Nectriaceae. Thus, an alternate hypothesis, namely a very broad concept of the genus Fusarium was proposed. In doing so, however, a significant body of data that supports distinct genera in Nectriaceae based on morphology, biology, and phylogeny is disregarded. A DNA phylogeny based on 19 orthologous protein-coding genes was presented to support a very broad concept of Fusarium at the F1 node in Nectriaceae. Here, we demonstrate that re-analyses of this dataset show that all 19 genes support the F3 node that represents Fusarium sensu stricto as defined by F. sambucinum (sexual morph synonym Gibberella pulicaris). The backbone of the phylogeny is resolved by the concatenated alignment, but only six of the 19 genes fully support the F1 node, representing the broad circumscription of Fusarium. Furthermore, a re-analysis of the concatenated dataset revealed alternate topologies in different phylogenetic algorithms, highlighting the deep divergence and unresolved placement of various Nectriaceae lineages proposed as members of Fusarium. Species of Fusarium s. str. are characterised by Gibberella sexual morphs, asexual morphs with thin- or thick-walled macroconidia that have variously shaped apical and basal cells, and trichothecene mycotoxin production, which separates them from other fusarioid genera. Here we show that the Wollenweber concept of Fusarium presently accounts for 20 segregate genera with clear-cut synapomorphic traits, and that fusarioid macroconidia represent a character that has been gained or lost multiple times throughout Nectriaceae. Thus, the very broad circumscription of Fusarium is blurry and without apparent synapomorphies, and does not include all genera with fusarium-like macroconidia, which are spread throughout Nectriaceae (e.g., Cosmosporella, Macroconia, Microcera). In this study four new genera are introduced, along with 18 new species and 16 new combinations. These names convey information about relationships, morphology, and ecological preference that would otherwise be lost in a broader definition of Fusarium. To assist users to correctly identify fusarioid genera and species, we introduce a new online identification database, Fusarioid-ID, accessible at www.fusarium.org. The database comprises partial sequences from multiple genes commonly used to identify fusarioid taxa (act1, CaM, his3, rpb1, rpb2, tef1, tub2, ITS, and LSU). In this paper, we also present a nomenclator of names that have been introduced in Fusarium up to January 2021 as well as their current status, types, and diagnostic DNA barcode data. In this study, researchers from 46 countries, representing taxonomists, plant pathologists, medical mycologists, quarantine officials, regulatory agencies, and students, strongly support the application and use of a more precisely delimited Fusarium (= Gibberella) concept to accommodate taxa from the robust monophyletic node F3 on the basis of a well-defined and unique combination of morphological and biochemical features. This F3 node includes, among others, species of the F. fujikuroi, F. incarnatum-equiseti, F. oxysporum, and F. sambucinum species complexes, but not species of Bisifusarium [F. dimerum species complex (SC)], Cyanonectria (F. buxicola SC), Geejayessia (F. staphyleae SC), Neocosmospora (F. solani SC) or Rectifusarium (F. ventricosum SC). The present study represents the first step to generating a new online monograph of Fusarium and allied fusarioid genera (www.fusarium.org)

A Multidisciplinary Approach to the Study of Contaminated Coastal and Fresh Water Environments.

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Bioturbation in the Venice Lagoon: Rates and relationship to organisms

International audienceExperiments were carried out during autumn 1998 and spring 1999 at four selected sites in the Venice Lagoon in order to estimate the major bioturbation modes, and for quantitative analysis of the contribution of various taxa to these modes. Fluorescent sediment particles (63-350 μm) were supplied as a tracer pulse input at the sediment surface. Tracer depth profiles obtained after 15 and 20 days were simulated with a diffusion-advection-non-local transport model. This allowed the rates of biodiffusion (Db), bioadvection (W), and RS, a non-local transport coefficient to account for the displacement of sediment by regeneration, to be estimated. A combination of fresh water and marine organisms were responsible for the recorded sediment reworking, which was dominated by both types of non-local transports (conveying and regeneration). Considering all the sampling sites and seasons, Db ranged from 0.87 ± 0.02 to 3.17 ± 0.92 cm2 y−1, W from 0.12 ± 0.09 to 27.41 ± 2.47 cm y−1 and RS from 0.00 ± 0.00 to 5.47 ± 1.09 g cm−2 y−1 (mean ± SE, n = 3). A multiple regression analysis was applied to identify the contribution from individual species to sediment transport types. Biodiffusion resulted from the combined activity of polychaetes such as Spio decoratus and meiobenthic harpacticoïd copepods, while the polychaete Hediste diversicolor was mainly responsible for regeneration. Conveying processes were driven by another polychaete, Capitella capitata. Despite heterogeneity in the benthic community composition, biodiffusion and regeneration rates did not vary significantly between sites or season, with only bioadvection found to be higher in spring than in autumn

An Integrated Approach to the Assessment of Pollutant Delivery Chronologies to Impacted Areas: Hg in the Augusta Bay (Italy)

Assessing pollution levels and trends in heavily impacted environments is important but hardly achievable due to the difficulty of recovering suitable undisturbed sediment records. An integrated approach is here presented to solve this kind of problem. It was adopted in the Augusta Bay (Italy) for the study of Hg historical inputs and present trends. Archive information on dredging and mud disposal, together with bathymetry and high-resolution seismic profiles, were used to identify suitable sampling sites. Undisturbed sediment cores were collected in the port and bay. Sediments were analyzed for depth distributions of radiotracers (²¹⁰Pb and ¹³⁷Cs), Hg, and main sediment parameters (magnetic susceptibility, grain size, dry bulk density, mineralogy, and organic carbon and nitrogen contents). Hexachlorobenzene (HCB) was also analyzed as an additional time tracer, since its production history in the area was well-known. Results show that peak Hg contamination (up to 575 mg·kg^–1) was reached in the 1970s. Technological improvements and waste treatment in the following years determined a consistent decrease, but high concentrations still affect surficial sediments (0.25–92 mg·kg^–1). Hg–HCB correlation suggests that this situation is likely the effect of resuspension and redistribution of deep sediments by dredging and naval traffic