200 research outputs found
Recommended from our members
Enhanced Energetic Stability and Optical Activity of Symmetry-Reduced C60
Since its discovery in 1985, the celebrated geodesic cage structure of the C{sub 60} molecule has been recognized: a truncated icosahedron in which all sixty vertices are equivalent and has the full I{sub h} symmetry, making it thus far the most spherical of all known molecules. Inherent in this high symmetry is an intricate network of electron-phonon coupling, evident in phonon progressions and vibronic peak broadening, and resulting in structural distortions of neutral C{sub 60} in the presence of solvent. Within the I{sub h} symmetry group of this molecule, of the forty-six distinct vibrational frequencies only ten are Raman-active and four are IR-active (in the first order), while the remaining 32 modes are optically silent. Symmetry-reduced structures of C{sub 60} would activate some of these silent modes, which could then be amenable to experimental verification such as in resonance Raman scattering. Here, quantum chemical calculations within density functional theory establish for the first times (1) lower-symmetry, energetically more stable structures for C{sub 60}, the lowest of which is of D{sub 3d} symmetry, and with a new assignment of the ground state as the {sup 1}A{sub 1g} state, (2) the activation of some IR and Raman I{sub h} silent modes: the IR H{sub u} mode around 540 cm{sup -1} and G{sub u} band at 1465 cm{sup -1}, and the Raman G{sub g} mode around 1530 cm{sup -1}
Recommended from our members
Preface to Symposium: Matter at Extreme Conditions: Theory and Application
The subject of ''Matter at Extreme Conditions'' encompasses a wide range of phenomena the thrust of which is to address the physical and chemical behaviors of materials exposed to ''abnormal'' conditions of high pressures, temperature extremes, or external fields. Recent advances in theoretical methodologies and first principle computational studies have predicted unusual properties and unraveled a few surprises when matter is subjected to such strains: a reversed and anomalous Doppler effects in shocked periodic media, the possible existence of low temperature liquid metallic state of hydrogen, and a superionic phase of water at high temperature and pressure. A unified approach from quantum mechanical principles allows for exploring such diverse and disparate subjects as ultracold plasmas in a strong magnetic field, and the dynamic aspects of Bose-Einstein condensates. These topics, which are aptly presented in this symposium, are but a few examples of interesting discoveries and methodologies in this active and exciting area of research. The development of reactive force fields from quantum mechanical principles for use in conjunction with molecular dynamics provide us with an invaluable tool for large-scale simulations to study the chemical transformations and decomposition products of complex organic systems at extreme conditions. Simulations implementing classical fields can provide an unprecedented access to the short time scales of chemical events that occur in dense fluids at high-temperature, and for the study of atomic clusters under strong laser pulses
Thylakoid proteome variation of Eutrema salsugineum in response to drought and salinity combined stress
It is well known that plant responses to stress involve different events occurring at different places of the cell/leaf and at different time scales in relation with the plant development. In fact, the organelles proteomes include a wide range of proteins that could include a wide range of proteins showing a considerable change in cellular functions and metabolism process. On this basis, a comparative proteomics analysis and fluorescence induction measurements were performed to investigate the photosynthetic performance and the relative thylakoid proteome variation in Eutrema salsugineum cultivated under salt stress (200 mM NaCl), water deficit stress (PEG) and combined treatment (PEG + NaCl) as a hyperosmotic stress. The obtained results showed a significant decrease of plant growth under drought stress conditions, with the appearance of some toxicity symptoms, especially in plants subjected to combined treatment. Application of salt or water stress alone showed no apparent change in the chlorophyll a fluorescence transients, primary photochemistry (fluorescence kinetics of the O-J phase), the PQ pool state (J-I phase changes), (Fv/Fm) and (Fk/Fj) ratios. However, a considerable decrease of all these parameters was observed under severe osmotic stress (PEG + NaCl). The thylakoid proteome analysis revealed 58 proteins showing a significant variation in their abundance between treatments (up or down regulation). The combined treatment (PEG + NaCl) induced a decrease in the expression of the whole PSII core subunit (D1, D2, CP43, CP47, PsbE and PsbH), whereas the OEC subunits proteins remained constant. An increase in the amount of PsaD, PsaE, PsaF, PsaH, PsaK and PsaN was detected under drought stress (PEG5%). No significant change in the accumulation of Cyt b6 and Cyt f was observed. Some regulated proteins involved in cellular redox homeostasis were detected (glutamine synthetase, phosphoglycerate kinase, transketolase), and showed a significant decrease under the combined treatment. Some oxidative stress related proteins were significantly up-regulated under salt or drought stress and could play a crucial role in the PSI photoprotection and the control of ROS production level
Cancer Patient Beliefs and Attitudes Regarding Immune Checkpoint Inhibitor Therapy
The development and widespread use of immune checkpoint inhibitors (ICIs) have advanced the field of oncology in a short period of time. Despite this, patient perception regarding this new medication class has not been adequately assessed, which may affect treatment decisions and adherence. The Belief about Medicines Questionnaire (BMQ) is a validated survey composed of 18 questions which analyzes patient’s beliefs about the necessity of prescribed medication and concern about the potential adverse events caused by the medication. General medication overuse and harm are also determined. This is the first study to utilize the BMQ for patients on ICI therapy
Recommended from our members
New Phases of Hydrogen-Bonded Systems at Extreme Conditions
We study the behavior of hydrogen-bonded systems under high-pressure and temperature. First principle calculations of formic acid under isotropic pressure up to 70 GPa reveal the existence of a polymerization phase at around 20 GPa, in support of recent IR, Raman, and XRD experiments. In this phase, covalent bonding develops between molecules of the same chain through symmetrization of hydrogen bonds. We also performed molecular dynamics simulations of water at pressures up to 115 GPa and 2000 K. Along this isotherm, we are able to define three different phases. We observe a molecular fluid phase with superionic diffusion of the hydrogens for pressure 34 GPa to 58 GPa. We report a transformation to a phase dominated by transient networks of symmetric O-H hydrogen bonds at 95-115 GPa. As in formic acid, the network can be attributed to the symmetrization of the hydrogen bond, similar to the ice VII to ice X transition
Recommended from our members
Simulations of highly reactive fluids
We report density functional molecular dynamics simulations to determine the early chemical events of hot (T = 3000 K) and dense (1.97 g/cm{sup 3}, V/V{sub 0} = 0.68) nitromethane (CH{sub 3}NO{sub 2}). The first step in the decomposition process is an intermolecular proton abstraction mechanism that leads to the formation of CH{sub 3}NO{sub 2}H and the aci ion H{sub 2}CNO{sub 2}{sup -}, in support of evidence from static high-pressure and shock experiments. An intramolecular hydrogen transfer that transforms nitromethane into the aci acid form, CH{sub 2}NO{sub 2}H, accompanies this event. This is the first confirmation of chemical reactivity with bond selectivity for an energetic material near the condition of fully reacted specimen. We also report the decomposition mechanism followed up to the formation of H{sub 2}O as the first stable product
Recommended from our members
Modeling the Reactions of Energetic Materials in the Condensed Phase
High explosive (HE) materials are unique for having a strong exothermic reactivity, which has made them desirable for both military and commercial applications. Although the history of HE materials is long, condensed-phase properties are poorly understood. Understanding the condensed-phase properties of HE materials is important for determining stability and performance. Information regarding HE material properties (for example, the physical, chemical, and mechanical behaviors of the constituents in plastic-bonded explosive, or PBX, formulations) is necessary in efficiently building the next generation of explosives as the quest for more powerful energetic materials (in terms of energy per volume) moves forward. In addition, understanding the reaction mechanisms has important ramifications in disposing of such materials safely and cheaply, as there exist vast stockpiles of HE materials with corresponding contamination of earth and groundwater at these sites, as well as a military testing sites The ability to model chemical reaction processes in condensed phase energetic materials is rapidly progressing. Chemical equilibrium modeling is a mature technique with some limitations. Progress in this area continues, but is hampered by a lack of knowledge of condensed phase reaction mechanisms and rates. Atomistic modeling is much more computationally intensive, and is currently limited to very short time scales. Nonetheless, this methodology promises to yield the first reliable insights into the condensed phase processes responsible for high explosive detonation. Further work is necessary to extend the timescales involved in atomistic simulations. Recent work in implementing thermostat methods appropriate to shocks may promise to overcome some of these difficulties. Most current work on energetic material reactivity assumes that electronically adiabatic processes dominate. The role of excited states is becoming clearer, however. These states are not accessible in perfect crystals under realistic pressures and temperatures, but may still be accessed through defects or other energy localization mechanisms
Recommended from our members
A Molecular Dynamics Study of Chemical Reactions of Solid Pentaerythritol Tetranitrate at Extreme Conditions
We have carried out density functional based tight binding (DFTB) molecular dynamics (MD) simulation to study energetic reactions of solid Pentaerythritol Tetranitrate (PETN) at conditions approximating the Chapman-Jouguet (CJ) detonation state. We found that the initial decomposition of PETN molecular solid is characterized by uni-molecular dissociation of the NO{sub 2}groups. Interestingly, energy release from this powerful high explosive was found to proceed in several stages. The large portion of early stage energy release was found to be associated with the formation of H{sub 2}O molecules within a few picoseconds of reaction. It took nearly four times as long for majority of CO{sub 2} products to form, accompanied by a slow oscillatory conversion between CO and CO{sub 2}. The production of N{sub 2} starts after NO{sub 2} loses its oxygen atoms to hydrogen or carbon atoms to form H{sub 2}O or CO. We identified many intermediate species that emerge and contribute to reaction kinetics, and compared our simulation with a thermo-chemical equilibrium calculation. In addition, a detailed chemical kinetics of formation of H{sub 2}O, CO, and CO{sub 2} were developed. Rate constants of formations of H{sub 2}O, CO{sub 2} and N{sub 2} were reported
Recommended from our members
A multi-scale approach to molecular dynamics simulations of shock waves
Study of the propagation of shock waves in condensed matter has led to new discoveries ranging from new metastable states of carbon [1] to the metallic conductivity of hydrogen in Jupiter, [2] but progress in understanding the microscopic details of shocked materials has been extremely difficult. Complications can include the unexpected formation of metastable states of matter that determine the structure, instabilities, and time-evolution of the shock wave. [1,3] The formation of these metastable states can depend on the time-dependent thermodynamic pathway that the material follows behind the shock front. Furthermore, the states of matter observed in the shock wave can depend on the timescale on which observation is made. [4,1] Significant progress in understanding these microscopic details has been made through molecular dynamics simulations using the popular non-equilibrium molecular dynamics (NEMD) approach to atomistic simulation of shock compression. [5] The NEMD method involves creating a shock at one edge of a large system by assigning some atoms at the edge a fixed velocity. The shock propagates across the computational cell to the opposite side. The computational work required by NEMD scales at least quadratically in the evolution time because larger systems are needed for longer simulations to prevent the shock wave from reflecting from the edge of the computational cell and propagating back into the cell. When quantum mechanical methods with poor scaling of computational effort with system size are employed, this approach to shock simulations rapidly becomes impossible
Recommended from our members
Computational Study of 3-D Hot-Spot Initiation in Shocked Insensitive High-Explosive
- …