Geochronology, geochemistry, and tectonic significance of the Shirenshan gneiss in the southern margin of the North China Block

The Shirenshan Block is a complex geological body located in the southern margin of the North China Block (NCB). From south to north, it can be divided into the Taihua Group migmatite, and the Shirenshan gneiss and magmatic rocks. The petrographic features, tectonic setting, provenance, and geological age of the Shirenshan gneiss using comprehensive field investigations, microstructural analysis, zircon U-Pb radioactive dating, and geochemical analyses were investigated for this study. The petrology, geochemistry, and geochronology of the Shirenshan gneiss suggests that it is mainly a felsic rock and its protolith was a high-K calc-alkaline series A-type granite. The protolith is high in SiO2, Al2O3, K2O, Na2O, and low in CaO and MgO. Overall, the Sr-Nd isotope composition of the samples showed no significant difference, indicating that the Taihua Group migmatite and the Shirenshan gneiss have the same source material. The Shirenshan block may be partially melted from the Taihua group and formed during activity of the Luo-Luan Fault. By the method of zircon dating analysis, the protolith age of the Shirenshan block was determined as 1559±16Ma (Early Proterozoic). Then, the crystallization age of the syntectonic migmatite is 439.2±7.6Ma, which was formed by subduction of the Taihua Group. During the early Cretaceous (119.5±1.3Ma), the Shirenshan gneiss may have experienced regional migmatization and formed the zircon rims age of the Yanshanian period. Litho-geochemical features of the Shirenshan block are similar to A1-type granites indicating that they are post-orogenic. Therefore, the metamorphic deformation of the Shirenshan gneiss reflects the tectonics in the southern margin of the NCB.</p

Metabolomics Analysis of Soybean Hypocotyls in Response to Phytophthora sojae Infection

Soybean is one of the most important economic and oil crops across the world. Phytophthora root rot (PRR), caused by Phytophthora sojae (P. sojae), is a major disease in most soybean-growing regions worldwide. Here, we investigated metabolic changes in hypocotyls of two soybean lines, Nannong 10-1 (resistant line, R) and 06-070583 (susceptible line, S), at two time points (12 and 36 hpi) after P. sojae infection and metabolic differences between the R line and the S line. In total, 90 differentially accumulated metabolites (DAMs) were identified after P. sojae infection; the levels of 50 metabolites differed between the R line and the S line. There are 28 DAMs that not only differentially accumulated between the R line and the S line but also differentially accumulated after P. sojae infection. Based on the changes of these DAMs in response to P. sojae infection in different lines and at different timepoints, and the differences in the contents of these DAMs between the R line and the S line, we speculated that DAMs, including sugars (monosaccharides and oligosaccharides), organic acids (oxalic acid, cumic acid), amino acid derivatives, and other secondary metabolites (mannitol, octanal, hypoxanthine, and daidzein etc.) may participate in the metabolic-level defense response of soybean to P. sojae. In this study, an integrated pathway-level analysis of transcriptomics (obtained by RNA-Seq) and metabolomics data illustrated the poor connections and interdependencies between the metabolic and transcriptional responses of soybean to P. sojae infection. This work emphasizes the value of metabolomic studies of plant–pathogen interactions and paves the way for future research of critical metabolic determinants of the soybean-P. sojae interaction

Dunhuang Tectonic Belt in northwestern China as a part of the Central Asian Orogenic Belt: Structural and U-Pb geochronological evidence

The final publication is available at Elsevier via https://dx.doi.org/10.1016/j.tecto.2018.09.008 © 2018. This manuscript version is made available under the CC-BY-NC-ND 4.0 license https://creativecommons.org/licenses/by-nc-nd/4.0/The Dunhuang Tectonic Belt (DTB) is located about 100 km south of the Beishan–Tianshan orogen in the Central Asian Orogenic Belt in NW China. It was previously considered as a part of the Tarim or North China craton. Detailed structural analyses reveal two episodes of deformation in the central DTB, D1 and D2. D1 is a north-side-up reverse shear, and D2 a dextral strike slip. Mineral assemblages, microstructures and quartz C-axis patterns indicate that D1 deformation took place under amphibolite facies conditions (500 to 600 °C) and D2 mostly under greenschist-facies conditions (300–450 °C). U–Pb zircon dating of eight granitoid/intermediate intrusions (mostly dikes, with well constrained cross-cutting relationships with the D1 and D2 structures) and an amphibolite gneiss indicates that D1 deformation took place before ca. 349 Ma and most likely at ca. 406 Ma, and D2 between ca. 249 Ma and ca. 241 Ma. The DTB has a structural, metamorphic and magmatic signature in the Paleozoic–Mesozoic that is typical of an orogenic belt. It shares a similar geological history with the Beishan–Tianshan orogen and is likely a part of the Central Asian Orogenic Belt. The DTB and the Beishan-Tianshan orogen might represent two separate Paleozoic mountain belts that developed more or less synchronously on the south and north sides, respectively, of the last vestige of the Paleo-Asian Ocean before its terminal closure in the Permian. The D1 reverse shearing in the DTB is interpreted to be related to a Silurian–Devonian terrane accretion/collision and the D2 dextral strike slip to post-accretional/collisional movement among terranes in Late Permian–Middle Triassic time.National Natural Science Foundation of China ["41472166","41272222"]China Geological Survey ["DD20160009"]Natural Sciences and Engineering Research Council of Canad

The crustal evolutionary history of the Cathaysia Block from the paleoproterozoic to mesozoic

published_or_final_versionEarth SciencesDoctoralDoctor of Philosoph

Geochronology and geochemistry of volcanic rocks from the Jingtan Formation in the eastern Jiangnan orogen, South China: Constraints on petrogenesis and tectonic implications

An integrated study of zircon U-Pb geochronology and geochemistry, together with Nd-Hf isotopes, have been carried out on the rhyodacite and rhyolitic tuff of the Jingtan Formation in the eastern part of the Jiangnan orogen. SIMS zircon U-Pb dating of two samples yielded weighted mean Pb-206/U-238 ages of 784 +/- 6 Ma and 788 +/- 6 Ma, respectively. Geochemically, they are peraluminous (A/CNK mostly around 1.2) and are characterized by enrichments in Rb, Th, REEs and HFSEs (e.g. Zr and Y) but depletions in Ba, Sr, P, Eu and Ti. The volcanic rocks show a clear A-type granite geochemical signature with high total alkalis (K2O + Na2O = 5.3-7.64 wt%), FeOt/MgO ratios and low CaO, MgO and TiO2 contents. They have negative whole-rock epsilon(Nd)(t) (-4.2 to -1) and positive zircon epsilon(Hf)(t) (+1.26 to +11.6) values, illustrating decoupled Nd-Hf isotopes which may be genetically related to their petrogenesis process. The positive epsilon(Hf)(t) values and juvenile T-DM1(Hf) (0.89-1.3 Ga) of zircons indicate that the volcanic rocks may have been derived from the partial melting of the Neoproterozoic to late Mesoproterozoic crustal materials. Combined with the occurrence of significant volumes of contemporary bimodal volcanic rocks in eastern section of the Jiangnan orogen, it is inferred that the Jingtan felsic volcanic rocks formed during post-collisional extension shortly after the final amalgamation of Yangtze and Cathaysia blocks. (C) 2017 Elsevier B.V. All rights reserved

Classification and Expression Profile of the U-Box E3 Ubiquitin Ligase Enzyme Gene Family in Maize (<i>Zea mays</i> L.)

The U-box E3 (PUB) family genes encode the E3 ubiquitin ligase enzyme, which determines substrate specific recognition during protein ubiquitination. They are widespread in plants and are critical for plant growth, development, and response to external stresses. However, there are few studies on the functional characteristic of PUB gene family in the important staple crop, maize (Zea mays L.). In this study, the PUB gene in maize was aimed to identify and classify through whole-genome screening. Phylogenetic tree, gene structure, conserved motif, chromosome location, gene duplication (GD), synteny, and cis-acting regulatory element of PUB member were analyzed. The expression profiles of ZmPUB gene family in maize during development and under abiotic stress and hormones treatment were analyzed by the RNA-seq data. A total of 79 PUB genes were identified in maize genome, and they were stratified into seven categories. There were 25 pairs of segmental duplications (SD) and 1 pair of tandem duplication (TD) identified in the maize PUB gene family. A close relationship was observed between the monocot plant maize and rice in PUB gene family. There were 94 kinds of cis-acting elements identified in the maize PUB gene family, which included 46 biotic- and abiotic-responsive elements, 19 hormone-responsive elements, 13 metabolic and growth-related elements. The expression profiles of maize PUB gene family showed characteristics of tissue specificity and response to abiotic stress and hormones treatment. These results provided an extensive overview of the maize PUB gene family

Screening and genotyping of Mur blood group among voluntary blood donors in the population of Hezhou, Guangxi

Objective To screen the distribution frequency of Mur blood group among voluntary blood donors in Hezhou, Guangxi, and further analyze the molecular basis of of Mur antigen positive samples. Methods The Mur phenotype of voluntary blood donors in Hezhou was serologically screened using microplate method, and the distribution frequency of Mur antigens in different ethnic groups was analyzed. Genetic typing was performed on these positive samples with PCR-SSP method to verify the accuracy of the serological method, and the genetic background was sequenced and analyzed. Results Among 3 298 samples from voluntary blood donors in Hezhou, 432(13.10%, 432/3 298) were screened positive for Mur antigen, and PCR-SSP genotyping validation showed that all 432 samples were electrophoretic positive. Among them, the proportion of Han blood donors with positive Mur antigen was 12.79%(331/2 587), Yao ethnic group was 13.25%(64/483), Zhuang ethnic group was 16.51%(36/218), and no statistically significant difference was found in the three groups(P>0.05). Further sequencing results showed that 428 samples were GYP(B-A-B) Mur, also known as GYP. Mur type(12.98%, 428/3 298), the other 4 samples were GYP(B-A-B) Bun, also known as GYP. Bun type(0.12%, 4/3 298). Conclusion The Mur blood type frequency is high in the voluntary blood donors in Hezhou, Guangxi, and is predominant characterized by GYP. Mur genotype. Due to ethnic integration, no significant difference was noticed in the frequency of Mur blood type distribution between Han, Zhuang and Yao population. Therefore, conducting extensive Mur blood group antigen and antibody testing in Hezhou is of great significance for ensuring clinical blood transfusion safety

Genome-wide association study of four yield-related traits at the R6 stage in soybean

Abstract Background The 100-pod fresh weight (PFW), 100-seed fresh weight (SFW), 100-seed dry weight (SDW) and moisture content of fresh seeds (MCFS) at the R6 stage are crucial factors for vegetable soybean yield. However, the genetic basis of yield at the R6 stage remains largely ambiguous in soybean. Results To better understand the molecular mechanism underlying yield, we investigated four yield-related traits of 133 soybean landraces in two consecutive years and conducted a genome-wide association study (GWAS) using 82,187 single nucleotide polymorphisms (SNPs). The GWAS results revealed a total of 14, 15, 63 and 48 SNPs for PFW, SFW, SDW and MCFS, respectively. Among these markers, 35 SNPs were repeatedly identified in all evaluated environments (2015, 2016, and the average across the two years), and most co-localized with yield-related QTLs identified in previous studies. AX-90496773 and AX-90460290 were large-effect markers for PFW and MCFS, respectively. The two markers were stably identified in all environments and tagged to linkage disequilibrium (LD) blocks. Six potential candidate genes were predicted in LD blocks; five of them showed significantly different expression levels between the extreme materials with large PFW or MCFS variation at the seed development stage. Therefore, the five genes Glyma.16g018200, Glyma.16g018300, Glyma.05g243400, Glyma.05g244100 and Glyma.05g245300 were regarded as candidate genes associated with PFW and MCFS. Conclusion These results provide useful information for the development of functional markers and exploration of candidate genes in vegetable soybean high-yield breeding programs