Differential Proteomic Analysis of Human Saliva using Tandem Mass Tags Quantification for Gastric Cancer Detection.

Novel biomarkers and non-invasive diagnostic methods are urgently needed for the screening of gastric cancer to reduce its high mortality. We employed quantitative proteomics approach to develop discriminatory biomarker signatures from human saliva for the detection of gastric cancer. Salivary proteins were analyzed and compared between gastric cancer patients and matched control subjects by using tandem mass tags (TMT) technology. More than 500 proteins were identified with quantification, and 48 of them showed significant difference expression (p < 0.05) between normal controls and gastric cancer patients, including 7 up-regulated proteins and 41 down-regulated proteins. Five proteins were selected for initial verification by ELISA and three were successfully verified, namely cystatin B (CSTB), triosephosphate isomerase (TPI1), and deleted in malignant brain tumors 1 protein (DMBT1). All three proteins could differentiate gastric cancer patients from normal control subjects, dramatically (p < 0.05). The combination of these three biomarkers could reach 85% sensitivity and 80% specificity for the detection of gastric cancer with accuracy of 0.93. This study provides the proof of concept of salivary biomarkers for the non-invasive detection of gastric cancer. It is highly encouraging to turn these biomarkers into an applicable clinical test after large scale validation

Three-dimensional simulations of the Parker instability in a uniformly rotating disk

We investigate the effects of rotation on the evolution of the Parker instability by carrying out three-dimensional numerical simulations with an isothermal magnetohydrodynamic code. These simulations extend our previous work on the nonlinear evolution of the Parker instability by J. Kim and coworkers. The initial equilibrium system is composed of exponentially stratified gas and a field (along the azimuthal direction) in a uniform gravity (along the downward vertical direction). The computational box, placed at the solar neighborhood, is set to rotate uniformly around the Galactic center with a constant angular speed. The instability has been initialized by random velocity perturbations. In the linear stage, the evolution is not much different from that without rotation, and the mixed (undular + interchange) mode regulates the system. The interchange mode induces alternating dense and rarefied regions with small radial wavelengths, while the undular mode bends the magnetic field lines in the plane of the azimuthal and vertical directions. In the nonlinear stage, flow motion overall becomes chaotic, as in the case without rotation. However, as the gas in higher positions slides down along field lines forming supersonic flows, the Coriolis force becomes important. As oppositely directed flows fall into valleys along both sides of the magnetic field lines, they experience the Coriolis force toward opposite directions, which twists the magnetic field lines there. Hence, we suggest that the Coriolis force plays a role in randomizing the magnetic field. The three-dimensional density structure formed by the instability is still sheetlike with the short dimension along the radial direction, as in the case without rotation. However, the long dimension is now slightly tilted with respect to the mean field direction. The shape of high-density regions is a bit rounder. The maximum enhancement factor of the vertical column density relative to its initial value is about 1.5, which is smaller than that in the case without rotation. We conclude that uniform rotation does not change our point of view that the Parker instability alone is not a viable mechanism for the formation of giant molecular cloudsopen252

Modelling Building Users’ Space Preferences for Group Work: A Discrete-Choice Experiment

Accurate space-use prediction helps architects to optimise space efficiency in buildings, thereby achieving economic and environmental sustainability. However, current space-use prediction models and approaches either disregard or oversimplify the role of building users’ space preferences in spatial-choice behaviour, thereby compromising prediction accuracy. The aim of this study was thus to develop a space-preference model of spatial choice behaviour with a focus on group work-related activities. A total of 2,464 observations of spatial choices were collected using a discrete-choice experiment. The data were modelled using a conditional logit model and then validated in a predictive success test. The resulting model clearly explains space preferences for group work-related activities and predicts spatial-choice behaviour by generating space-use probabilities for given spaces. The model is compared to a space preference model for individual work-related activities. Lastly, the application of the model was demonstrated in a case example.This work was supported by Hong Kong Polytechnic University: [grant number 1-ZE5H]

SDN-based Active Content Networking

This paper proposes a Software Defined Networking (SDN)-based active content networking architecture for future media environments. The proposed architecture aims to provide customized delivery of various types of media content in order to satisfy various demands of users and service requirements. To this end, we have developed an active content processing model which provides in-network content processing through service objects that are integral parts of active content. The main benefits provided by the proposed model are high flexibility and creativity to meet the evolving future media environments

Seasonal variations in the aragonite saturation state in the upper open-ocean waters of the North Pacific Ocean

Seasonal variability of the aragonite saturation state ((AR)) in the upper (50m and 100m depths) North Pacific Ocean (NPO) was investigated using multiple linear regression (MLR). The MLR algorithm derived from a high-quality carbon data set accurately predicted the (AR) of evaluation data sets (three time series stations and P02 section) with acceptable uncertainty (<0.1(AR)). The algorithm was combined with seasonal climatology data, and the estimated (AR) varied in the range of 0.4-0.6 in the midlatitude western NPO, with the largest variation found for the tropical eastern NPO. These marked variations were largely controlled by seasonal changes in vertical mixing and thermocline depth, both of which determine the degree of entrainment of CO2-rich corrosive waters from deeper depths. Our MLR-based subsurface (AR) climatology is complementary to surface climatology based on pCO(2) measurements.1184Ysciescopu

Letter to the Editor—Journal of Cardiovascular Translational Research

This issue’s focus on women and cardiovascular medicine is timely and critically important. Recently published studies have underscored, yet again, that cardiovascular disease research must more effectively and aggressively target women if it is to produce results that lead to improved prevention and early detection, accurate diagnosis, and proper treatment for women. Specifically, one study found that women have been underrepresented in NIH-supported cardiovascular randomized controlled trials conducted in the past 10 years, despite a 1993 federal law requiring clinical trials to include a significant proportion of women [1]. Possible reasons for this failure are varied, ranging from a lack of information about the availability of clinical trials by women patients and their healthcare providers to study designs that exclude women heart patients due to their medical conditions, medications, or history. Pragmatic concerns by women patients about how participation in a clinical trial will affect their health insurance coverage and the logistical difficulties of transportation and childcare also have an adverse effect on participation rates [2]. The impact of failing to overcome these barriers and significantly increasing the number of women in clinical trials has contributed to a substantial deficit of gender-based knowledge about everything from the “typical ” heart attack symptoms in women to the risks and benefits of commonly used diagnostic tests and therapies [3]. Exacerbating this problem are the serious lapses in the U.S

Kinetic roughening of ion-sputtered Pd(001) surface: Beyond the Kuramoto-Sivashinsky model

The kinetic roughening of Ar+ ion-sputtered Pd(001) surface was investigated. The facet formation on the sputtered surface was studied by tracing the extradiffraction peaks or satellites around the diffraction peaks corresponding to the sample surface. The morphological evolution of the sputtered Pd(001) surface was also investigated by an scanning tunneling microscopy (STM). It was shown that the nanoscale adatom islands form and grow with increasing sputter time.open313

Template Synthesis of Three-Dimensional Cubic Ordered Mesoporous Carbon With Tunable Pore Sizes

Three-dimensional cubic ordered mesoporous carbons with tunable pore sizes have been synthesized by using cubic Ia3d mesoporous KIT-6 silica as the hard template and boric acid as the pore expanding agent. The prepared ordered mesoporous carbons were characterized by powder X-ray diffraction, scanning electron microscopy, transmission electron microscopy, and nitrogen adsorption–desorption analysis. The results show that the pore sizes of the prepared ordered mesoporous carbons with three-dimensional cubic structure can be regulated in the range of 3.9–9.4 nm. A simplified model was proposed to analyze the tailored pore sizes of the prepared ordered mesoporous carbons on the basis of the structural parameters of the silica template

Value-added Synthesis of Graphene: Recycling Industrial Carbon Waste into Electrodes for High-Performance Electronic Devices

We have developed a simple, scalable, transfer-free, ecologically sustainable, value-added method to convert inexpensive coal tar pitch to patterned graphene films directly on device substrates. The method, which does not require an additional transfer process, enables direct growth of graphene films on device substrates in large area. To demonstrate the practical applications of the graphene films, we used the patterned graphene grown on a dielectric substrate directly as electrodes of bottom-contact pentacene field-effect transistors (max. field effect mobility similar to 0.36 cm(2).V-1.s(-1)), without using any physical transfer process. This use of a chemical waste product as a solid carbon source instead of commonly used explosive hydrocarbon gas sources for graphene synthesis has the dual benefits of converting the waste to a valuable product, and reducing pollution.111714Ysciescopu

Flexible Programming of Cell-Free Protein Synthesis Using Magnetic Bead-Immobilized Plasmids

The use of magnetic bead-immobilized DNA as movable template for cell-free protein synthesis has been investigated. Magnetic microbeads containing chemically conjugated plasmids were used to direct cell-free protein synthesis, so that protein generation could be readily programmed, reset and reprogrammed. Protein synthesis by using this approach could be ON/OFF-controlled through repeated addition and removal of the microbead-conjugated DNA and employed in sequential expression of different genes in a same reaction mixture. Since the incubation periods of individual template plasmids are freely controllable, relative expression levels of multiple proteins can be tuned to desired levels. We expect that the presented results will find wide application to the flexible design and execution of synthetic pathways in cell-free chassis