Genome-Wide Analysis of Neuroblastomas using High-Density Single Nucleotide Polymorphism Arrays

BACKGROUND: Neuroblastomas are characterized by chromosomal alterations with biological and clinical significance. We analyzed paired blood and primary tumor samples from 22 children with high-risk neuroblastoma for loss of heterozygosity (LOH) and DNA copy number change using the Affymetrix 10K single nucleotide polymorphism (SNP) array. FINDINGS: Multiple areas of LOH and copy number gain were seen. The most commonly observed area of LOH was on chromosome arm 11q (15/22 samples; 68%). Chromosome 11q LOH was highly associated with occurrence of chromosome 3p LOH: 9 of the 15 samples with 11q LOH had concomitant 3p LOH (P = 0.016). Chromosome 1p LOH was seen in one-third of cases. LOH events on chromosomes 11q and 1p were generally accompanied by copy number loss, indicating hemizygous deletion within these regions. The one exception was on chromosome 11p, where LOH in all four cases was accompanied by normal copy number or diploidy, implying uniparental disomy. Gain of copy number was most frequently observed on chromosome arm 17q (21/22 samples; 95%) and was associated with allelic imbalance in six samples. Amplification of MYCN was also noted, and also amplification of a second gene, ALK, in a single case. CONCLUSIONS: This analysis demonstrates the power of SNP arrays for high-resolution determination of LOH and DNA copy number change in neuroblastoma, a tumor in which specific allelic changes drive clinical outcome and selection of therapy

Enzymatic hydrolysis of sorghum straw using native cellulase produced by T. reesei NCIM 992 under solid state fermentation using rice straw

Cellulose is a major constituent of renewable lignocellulosic waste available in large quantities and is considered the most important reservoir of carbon for the production of glucose, for alternative fuel and as a chemical feedstock. Over the past decade, the emphasis has been on the enzymatic hydrolysis of cellulose to glucose and the efficiency of which depends on source of cellulosic substrate, its composition, structure, pretreatment process, and reactor design. In the present study, efforts were made to produce cellulase enzyme using rice straw. The produced enzyme was used for the hydrolysis of selected lignocellulosic substrate, i.e., sorghum straw. When rice straw was used as a substrate for cellulase production under solid state fermentation, the highest enzyme activity obtained was 30.7 FPU/gds, using T. reesei NCIM 992. 25 FPU/g of cellulase was added to differently treated (native, alkali treated, alkali treated followed by 3% acid treated and alkali treated followed by 3 and 5% acid treated) sorghum straw and hydrolysis was carried out at 50 °C for 60 h. 42.5% hydrolysis was obtained after 36 h of incubation. Optimization of enzyme loading, substrate concentration, temperature, time and buffer yielded a maximum of 546.00 ± 0.55 mg/g sugars (54.60 ± 0.44 g/l) with an improved hydrolysis efficiency of 70 ± 0.45%. The enzymatic hydrolyzate can be used for fermentation of ethanol by yeasts

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Not AvailableVegetable crops are cultivated worldwide for its nutritional benefits and neutraceutical properties. It is the only source to meet the goal of nutritional security. Sucking insect pests are considered as one of the major biotic constrains for vegetable production in India. These pests cause direct damage by sucking the sap via specially adapted mouthparts and secrete the sugar rich honeydew deposit on plant surface and create the black sooty mould, thereby hindering the normal photosynthesis of the plants. Apart from direct damage, they also act as vectors for several viral diseases. In recent past, some of the insect pests of vegetable crops become major and are gradually attaining the major pest status in different regions of the country due to changes in the cropping pattern, ecosystems and habitat, climate and wider use of high input intensive vegetable varieties/hybrids. Sucking pests like whitefly (Bemisia tabaci); leafhopper (Empoasca motti) on bitter gourd; red spider mite (Tetranychus spp.) on okra, brinjal, cowpea, and Indian bean; yellow mite (Polyphagotarsonemus latus) on chilli; and mealybug (Phenacoccus solenopsis) on okra, chilli, brinjal, and tomato, especially in protected conditions have intensified the severity of occurrence in different parts of country. Success of management of insect pests highly depends on correct identification and choice of proper control measures. An attempt has been made in this book chapter to compile information on pest identification, its biology, and nature of damage and integrated management of sucking pests for sustainable vegetable production.Not Availabl

Synergistic Interaction of Methanotrophs and Methylotrophs in Regulating Methane Emission

Not AvailableThe atmospheric methane concentration is increasing rapidly at the rate of around 10 ppb/year. A concerted effort is required to reduce methane emission. Methanotrophs possess methane monooxygenase enzyme system and can consume a major portion of the methane produced in the environment. These microbes play a major role in the single-carbon-driven microbial food web. Microbial interaction is an important component of microbial ecology studies, and its role in community functioning and various biogeochemical cycles still remains unclear. A synergistic interaction occurs between the methanotrophs and non-methane-utilizing methylotrophs (NUM) in the natural ecosystem. The intermediates produced by the methanotrophs can be used as a carbon source by the NUM and support its existence. On the other hand, NUM consumes toxic intermediates like methanol and formaldehyde of the methanotrophs and prolongs their growth. The consumption of the intermediates (methanol, formaldehyde and formate) of the methane utilization pathway by methylotrophs as a result of cross-feeding enhances the methane utilization rate of that ecosystem. Co-inoculation of methanotrophs and NUM in the natural habitat particularly paddy ecosystem can aid in the reduction of net methane emission. This chapter highlights the role of microbial interactions, particularly between methanotrophs and methylotrophs, that can beNot Availabl

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Not AvailableConsidering the huge negative imapct of chemical pesticides, there has been gradual shifting towards sustainable and ecofriendly option for the management of pests and diseases. Microbial biopesticides emerged as one of the safest alternative to chemical pesticides. In recent decades there has been gradual increase in biopesticides usage in global market. This is an indicative of its significance towards sustainable food production by reducing use of chemical pesticides. However, thier efficacy, reproducibility, availability, unawareness, optimisation and implementation are the major constraints associated with use of microbial biopesticides. Nevertheless, considerable amount of research and development still required to address the limitations associated with microbial biopesticides to increase their utilization by stake holders.Not Availabl

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Not AvailableThe shoot and fruit borer, Earias vittella Fab. (Lepidoptera: Nolidae) is an important and most devastating insect pest on okra and cotton. The pest mainly responsible for causing significant direct damage to tender shoots and fruits of okra, flowers and green bolls of cotton causing net yield loss in both crops. Many non-chemical control strategies have been developed under the insect pest management program, A complete knowledge on the antennal morphology of E. vitella is essential for future electrophysiological and behavioural studies. In the present study, the antennal morphology and types of sensilla on the antennae of both sexes of E. vitella were examined using light and scanning electron microscopy. Nine distinct types of sensilla were identified on the antennae of both sexes: sensilla trichodea, sensilla basiconica, sensilla coeloconica, sensilla auricillica (multiporous), sensilla chaetica, uniporous peg sensilla (uniporous), sensilla styloconica, sensilla squamiformia and bohm bristles (aporous). Among all sensilla, the most widespread are multiporous sensilla trichodea with 42.90 ± 1.77/flagellomere in male and 37.38 ± 1.38/flagellomere in female. Sensilla basiconica were the second most common sensillum type in male antennae with 15.67 ± 1.92/flagellomere. Other multiporous sensilla such as auricillica (11.90 ± 0.99) and coeloconica (4.57 ± 0.25) were significantly more abundant in female than in male antennae. Results of the study provide morphological evidence that E. vitella antennae possess microscopic cuticular structures that can play a role in perception of pheromones, plant odours and other chemical stimulants. This will open up opportunities to assess the possibility of using pheromones and plant-derived compounds for the monitoring or management of E. vittella moths in the agricultural landscapes.Not Availabl