Emerge

This report is with reference to the Final Year Project, titled ‘Emerge’. Emerge is a 2D digitally animated short film that tells the story of an individual named ‘Zero’, a lonely individual living among shapeshifters, and his journey towards self-discovery.Bachelor of Fine Art

Real-Time Finger-Writing Character Recognition via ToF Sensors on Edge Deep Learning

Human–computer interaction is demanded for natural and convenient approaches, in which finger-writing recognition has aroused more and more attention. In this paper, a device-free finger-writing character recognition system based on an array of time-of-flight (ToF) distance sensors is presented. The ToF sensors acquire distance values between sensors to a writing finger within a 9.5 × 15 cm square on a surface at specific time intervals and send distance data to a low-power microcontroller STM32F401, equipped with deep learning algorithms for real-time inference and recognition tasks. The proposed method enables one to distinguish 26 English lower-case letters by users writing with their fingers and does not require one to wear additional devices. All data used in this work were collected from 21 subjects (12 males and 9 females) to evaluate the proposed system in a real scenario. In this work, the performance of different deep learning algorithms, such as long short-term memory (LSTM), convolutional neural networks (CNNs) and bidirectional LSTM (BiLSTM), was evaluated. Thus, these algorithms provide high accuracy, where the best result is extracted from the LSTM, with 98.31% accuracy and 50 ms of maximum latency

Effects of <i>Bacillus cereus</i> on Survival, Fecundity, and Host Adaptability of Pine Wood Nematode

To clarify the role of bacteria in PWD, three PWNs with different virulence (strongly virulent strain AMA3, normally virulent strain AA3, and weakly virulent strain YW4) were selected as research objects, and three strains of Bacillus cereus (nematode-associated bacteria GD1, Pinus massoniana endophytic bacteria GD2, and P. elliottii endophytic bacteria NJSZ-13) at different concentrations were used to determine their effects on the survival and fecundity of the nematodes. The results showed that strains GD1 and GD2 could significantly improve the survival and fecundity of PWNs at three different concentrations, while NJSZ-13 showed the opposite effects. The inoculation experiments showed that the disease index of P. massoniana under different treatments was as follows: AMA3 Larix kaempferi inoculation experiment. Further, using RNA-sequencing analysis, we found that the up-regulated genes in PWN were sHsp 21, Hsp 70, and Hsp 72 after being treated by strains GD1 and GD2. The longevity regulatory pathways, MAPK signaling pathways, glutathione metabolic pathways, and cytochrome P450 metabolic pathways related to these genes are clearly enriched. These results show that the bacteria can improve the host adaptability of PWN, and endophytic bacteria of pine trees may be more effective in improving the host adaptability of nematodes than the associated bacteria of nematodes

The Characterization of the Inhibitory Substances Produced by <i>Bacillus pumilus</i> LYMC-3 and the Optimization of Fermentation Conditions

Bacillus pumilus plays a very important role in the biological control of plant diseases. In this study, we conducted indoor biocontrol experiments using the LYMC-3 strain of B. pumilus to assess its efficacy against poplar canker and tea gray blight. Simultaneously, we explored the optimal fermentation conditions for the production of inhibitory substances against Phomopsis macrospora and Pestalotiopsis vesicolor. Subsequently, the inhibitory substances were extracted crudely and subjected to a preliminary investigation of their properties. The results of the indoor biocontrol experiments showed that the LYMC-3 strain exhibited disease prevention rates of 44.12% and 48.59% against poplar canker and tea gray blight, respectively. The fermentation optimization experiment showed that a culture medium containing 10 g/L of glucose, 15 g/L of tryptone, and 5 g/L of sodium chloride favored the production of inhibitory substances via the LYMC-3 strain. Among the crude extracts obtained, the non-protein extracts demonstrated the most obvious inhibitory effects. Furthermore, the inhibitory substances exhibited high polarity, excellent thermal stability, and high sensitivity to strong acids and bases. This study establishes a theoretical foundation for the purification and identification of inhibitory substances using the LYMC-3 strain. Additionally, it contributes to elucidating biological control mechanisms and facilitates the application of the LYMC-3 strain in production

An alkaline protease from Bacillus cereus NJSZ-13 can act as a pathogenicity factor in infection of pinewood nematode

Abstract Endophytic bacteria are an important biological control for nematodes. We isolated the nematicidal Bacillus cereus NJSZ-13 from healthy Pinus elliottii trunks. Bioassay experiments showed killing of all tested nematodes by proteins from the NJSZ-13 culture filtrate within 72 h. Degradation of the nematode cuticles was observed, suggesting the action of extracellular bacterial enzymes. The responsible protease was purified by ammonium sulfate precipitation, hydrophobic interaction chromatography, ion-exchange chromatography, and SDS-PAGE. The protease had a molecular weight of 28 kDa and optimal activity at 55 °C and pH 9, indicating an alkaline protease. The study suggests the potential for using this B. cereus NJSZ-13 strain protease to prevent pinewood nematode infection

Experimental Branching Fractions, Transition Probabilities, and Oscillator Strengths in Sm ii

Branching fractions (BFs) of Sm ii for 71 lines from 12 excited levels ranging from 31,638.79 to 35,463.91 cm ^−1 were determined for the first time based on the Fourier transform spectra available from the National Solar Observatory database. New transition probabilities and oscillator strengths for these lines were derived by combining the determined BFs with reliable lifetimes measured using a time-resolved laser-induced fluorescence technique. Furthermore, BFs for 38 lines from five levels included in earlier studies were also determined for comparisons. The new results reported in this work will be useful in many fields, especially for astrophysics

Simultaneous Sensitive Determination of &delta;13C, &delta;18O, and &delta;17O in Human Breath CO2 Based on ICL Direct Absorption Spectroscopy

Previous research revealed that isotopes 13C and 18O of exhaled CO2 have the potential link with Helicobacter pylori; however, the 17O isotope has received very little attention. We developed a sensitive spectroscopic sensor for simultaneous &delta;13C, &delta;18O, and &delta;17O analysis of human breath CO2 based on mid-infrared laser direct absorption spectroscopy with an interband cascade laser (ICL) at 4.33 &mu;m. There was a gas cell with a small volume of less than 5 mL, and the pressure in the gas cell was precisely controlled with a standard deviation of 0.0035 Torr. Moreover, real-time breath sampling and batch operation were achieved in gas inlets. The theoretical drifts for &delta;13C, &delta;18O, and &delta;17O measurement caused by temperature were minimized to 0.017&permil;, 0.024&permil;, and 0.021&permil;, respectively, thanks to the precise temperature control with a standard deviation of 0.0013 &deg;C. After absolute temperature correction, the error between the system responded &delta;-value and the reference is less than 0.3&permil;. According to Allan variance analysis, the system precisions for &delta;13C, &delta;18O, and &delta;17O were 0.12&permil;, 0.18&permil;, and 0.47&permil;, respectively, at 1 s integration time, which were close to the real-time measurement errors of six repeated exhalations

Early Diagnosis of Pine Wilt Disease in <i>Pinus thunbergii</i> Based on Chlorophyll Fluorescence Parameters

As the most severe forestry quarantine disease in several countries, pine wilt disease (PWD) causes substantial economic losses and poses a significant threat to the forest ecosystem. It is necessary to find a rapid and sensitive method for the early diagnosis of the disease to control the development of the disease effectively. This paper investigated the effect of Bursaphelenchus xylophilus (the pinewood nematode; PWN) on the chlorophyll fluorescence kinetic curve (OJIP curve) and the parameters of needles using four-year-old Pinus thunbergii as experimental materials and chlorophyll fluorescence analysis as a technical tool. It was shown by the results in the OJIP curve that the fluorescence intensity of the inoculated plants was significantly increased at points O and I. Additionally, the relative variable fluorescence intensity at points K and J was comparable to that of the control plants. Several chlorophyll fluorescence parameters of the treatment significantly increased or decreased with disease progression. At the same time, the control group had no significant changes in each parameter. Therefore, chlorophyll fluorescence parameters can be used as indicators for the early diagnosis of PWD, among which the DIo/RC parameter was the best. In summary, PWN invasion will produce fluorescence on the PSII of P. thunbergii, and its chlorophyll fluorescence parameters are expected to achieve early PWD diagnosis

Effect of Associated Bacteria GD1 on the Low-Temperature Adaptability of <i>Bursaphelenchus xylophilus</i> Based on RNA-Seq and RNAi

To explore the effect of associated bacteria on the low-temperature adaptability of pinewood nematodes (PWNs), transcriptome sequencing (RNA-seq) of PWN AH23 treated with the associated bacterial strain Bacillus cereus GD1 was carried out with reference to the whole PWN genome. Bioinformatic software was utilized to analyze the differentially expressed genes (DEGs). This study was based on the analysis of DEGs to verify the function of daf-11 by RNAi. The results showed that there were 439 DEGs between AH23 treated with GD1 and those treated with ddH2O at 10 °C. There were 207 pathways annotated in the KEGG database and 48 terms annotated in the GO database. It was found that after RNAi of daf-11, the survival rate of PWNs decreased significantly at 10 °C, and fecundity decreased significantly at 15 °C. It can be concluded that the associated bacteria GD1 can enhance the expression of genes related to PWN low-temperature adaptation and improve their adaptability to low temperatures

Effects of <i>Antheraea pernyi</i> on Parasitization of <i>Kriechbaumerella dendrolimi</i> by Using Immunology and Metabolomics

Kriechbaumerella dendrolimi (Hymenoptera, Chalcididae) is a dominant pupal parasitoid species of various significant pine caterpillars, including Dendrolimus houi Lajonquiere (Lepidoptera, Lasiocampidae), with great potential for utilization. So far, the mass rearing of K. dendrolimi has been successfully established using Antheraea pernyi (Lepidoptera, Saturniidae) pupae as alternative hosts and released in the forest to suppress D. houi populations. However, the outcome is still expected to be improved due to lower parasitism rates, which might be related to the autonomous immune function of A. pernyi pupae. In our study, we investigated the effects of K. dendrolimi parasitization on the immune responses of A. pernyi pupae by measuring the expression of key immune factors: superoxide dismutase (SOD), polyphenol oxidases (PPOs), Attacin, Lysozymes (LYSs), and serine proteases (PRSSs). Our results show that parasitization significantly upregulated these immune factors, with distinct temporal patterns observable between 4 and 48 h post-parasitization. This upregulation highlights a robust immune response, adapting over time to the parasitic challenge. These findings suggest that specific immune mechanisms in A. pernyi pupae are activated in response to K. dendrolimi, shedding light on potential targets for enhancing host resistance. Metabolomic analyses complemented these findings by illustrating the broader metabolic shifts associated with the immune response. Specifically, Attacin was significantly upregulated twice, hypothesizing that the parasitoid’s venom contains at least two parasitic factors. Metabolomics analysis revealed a significant metabolite difference within parasitized A. pernyi pupae. The highest number of differential expression metabolites (DEMs) was observed at 16 h post-parasitism (1184 metabolites), with fewer DEMs at 8 h (568 metabolites) and 32 h (693 metabolites), suggesting a close relationship between parasitism duration and the number of DEMs. These fluctuations reflected the fundamental process of immune interaction. KEGG enrichment results showed that the DEMs were mainly enriched in energy metabolism and immune-related pathways, indicating that parasitism is a process of continuous consumption and immune interaction in the host. These DEMs could also become future targets for regulating the immune functions of A. pernyi pupae and could provide reference data for optimizing mass-rearing techniques