Binary Classification with Instance and Label Dependent Label Noise

Learning with label dependent label noise has been extensively explored in both theory and practice; however, dealing with instance (i.e., feature) and label dependent label noise continues to be a challenging task. The difficulty arises from the fact that the noise rate varies for each instance, making it challenging to estimate accurately. The question of whether it is possible to learn a reliable model using only noisy samples remains unresolved. We answer this question with a theoretical analysis that provides matching upper and lower bounds. Surprisingly, our results show that, without any additional assumptions, empirical risk minimization achieves the optimal excess risk bound. Specifically, we derive a novel excess risk bound proportional to the noise level, which holds in very general settings, by comparing the empirical risk minimizers obtained from clean samples and noisy samples. Second, we show that the minimax lower bound for the 0-1 loss is a constant proportional to the average noise rate. Our findings suggest that learning solely with noisy samples is impossible without access to clean samples or strong assumptions on the distribution of the data

Structure of shock compressed model basaltic glass: Insights from O K-edge X-ray Raman scattering and high-resolution ^(27)Al NMR spectroscopy

The detailed atomic structures of shock compressed basaltic glasses are not well understood. Here, we explore the structures of shock compressed silicate glass with a diopside–anorthite eutectic composition (Di_(64)An_(36)), a common Fe-free model basaltic composition, using oxygen K-edge X-ray Raman scattering and high- resolution ^(27)Al solid-state NMR spectroscopy and report previously unknown details of shock-induced changes in the atomic configurations. A topologically driven densification of the Di_(64)An_(36) glass is indicated by the increase in oxygen K-edge energy for the glass upon shock compression. The first experimental evidence of the increase in the fraction of highly coordinated Al in shock compressed glass is found in the ^(27)Al NMR spectra. This unambiguous evidence of shock-induced changes in Al coordination environments provides atomistic insights into shock compression in basaltic glasses and allows us to microscopically constrain the magnitude of impact events or relevant processes involving natural basalts on Earth and planetary surfaces

NOD2/RICK-dependent β-defensin 2 regulation is protective for nontypeable Haemophilus influenzae-induced middle ear infection.

Middle ear infection, otitis media (OM), is clinically important due to the high incidence in children and its impact on the development of language and motor coordination. Previously, we have demonstrated that the human middle ear epithelial cells up-regulate β-defensin 2, a model innate immune molecule, in response to nontypeable Haemophilus influenzae (NTHi), the most common OM pathogen, via TLR2 signaling. NTHi does internalize into the epithelial cells, but its intracellular trafficking and host responses to the internalized NTHi are poorly understood. Here we aimed to determine a role of cytoplasmic pathogen recognition receptors in NTHi-induced β-defensin 2 regulation and NTHi clearance from the middle ear. Notably, we observed that the internalized NTHi is able to exist freely in the cytoplasm of the human epithelial cells after rupturing the surrounding membrane. The human middle ear epithelial cells inhibited NTHi-induced β-defensin 2 production by NOD2 silencing but augmented it by NOD2 over-expression. NTHi-induced β-defensin 2 up-regulation was attenuated by cytochalasin D, an inhibitor of actin polymerization and was enhanced by α-hemolysin, a pore-forming toxin. NOD2 silencing was found to block α-hemolysin-mediated enhancement of NTHi-induced β-defensin 2 up-regulation. NOD2 deficiency appeared to reduce inflammatory reactions in response to intratympanic inoculation of NTHi and inhibit NTHi clearance from the middle ear. Taken together, our findings suggest that a cytoplasmic release of internalized NTHi is involved in the pathogenesis of NTHi infections, and NOD2-mediated β-defensin 2 regulation contributes to the protection against NTHi-induced otitis media

Interfirm IT Capability Profiles and Communications for Cocreating Relational Value: Evidence from the Logistics Industry

This study seeks to identify the means by which information technology helps cocreate relational value in the context of interfirm relationships in the logistics industry—a large and information-intensive industry. We identify a set of IT functionalities—single-location shipping, multilocation shipping, supply chain visibility, and financial settlement—that can be used to manage the flows of physical goods, information, and finances across locations in interfirm logistics processes. Progressively more advanced sets of IT functionalities, when implemented and used in the interfirm relationship to execute logistics processes, are proposed to form four distinct IT capability profiles of increased sophistication. Interfirm IT capability profiles of higher sophistication are proposed to help cocreate greater relational value by facilitating the flows of physical goods, information, and finances across locations in the interfirm logistics process. Besides their direct role in helping cocreate relational value, these interfirm IT capability profiles are proposed to further enhance relational value cocreation when complemented by interfirm communications for business development and IT development.Our empirical study was situated in one of the world’s largest logistics suppliers and over 2,000 of its interfirm relationships with buyers across industries. Integrated data from four archival sources on the IT functionalities implemented and used in interfirm logistics relationships, interfirm communications, relational value (share of wallet and loyalty), and multiple control variables were collected. The results show that the proposed interfirm IT capability profiles and interfirm communications have both a direct and an interaction effect on relational value. Implications for cocreating relational value in interfirm relationships with the aid of IT are discussed

Which Soft Tissue Sarcoma Patients with Lung Metastases Should not Undergo Pulmonary Resection?

Using the second best method of meta-analysis it is significantly shown that patients with an interval of less than 7 months between diagnosis of soft tissue sarcoma and lung surgery for metastases do not benefit

The Origin of the Intrinsic Scatter in the Relation Between Black Hole Mass and Bulge Luminosity for Nearby Active Galaxies

We investigate the origin of the intrinsic scatter in the correlation between black hole mass (MBH) and bulge luminosity [L(bulge)] in a sample of 45 massive, local (z < 0.35) type~1 active galactic nuclei (AGNs). We derive MBH from published optical spectra assuming a spherical broad-line region, and L(bulge) from detailed two-dimensional decomposition of archival optical Hubble Space Telescope images. AGNs follow the MBH-L(bulge) relation of inactive galaxies, but the zero point is shifted by an average of \Delta log MBH ~ -0.3 dex. We show that the magnitude of the zero point offset, which is responsible for the intrinsic scatter in the MBH-L(bulge) relation, is correlated with several AGN and host galaxy properties, all of which are ultimately related to, or directly impact, the BH mass accretion rate. At a given bulge luminosity, sources with higher Eddington ratios have lower MBH. The zero point offset can be explained by a change in the normalization of the virial product used to estimate MBH, in conjunction with modest BH growth (~ 10%--40%) during the AGN phase. Galaxy mergers and tidal interactions appear to play an important role in regulating AGN fueling in low-redshift AGNs.Comment: To appear in ApJ; 67 pages, 56 figures, 4 tables, version with full resolution figures at http://users.ociw.edu/mjkim/papers/scatter.pd

Argonaute 2 in dopamine 2 receptor–expressing neurons regulates cocaine addiction

Cocaine is a highly addictive drug that exerts its effects by increasing the levels of released dopamine in the striatum, followed by stable changes in gene transcription, mRNA translation, and metabolism within medium spiny neurons in the striatum. The multiple changes in gene and protein expression associated with cocaine addiction suggest the existence of a mechanism that facilitates a coordinated cellular response to cocaine. Here, we provide evidence for a key role of miRNAs in cocaine addiction. We show that Argonaute 2 (Ago2), which plays an important role in miRNA generation and execution of miRNA-mediated gene silencing, is involved in regulation of cocaine addiction. Deficiency of Ago2 in dopamine 2 receptor (Drd2)–expressing neurons greatly reduces the motivation to self-administer cocaine in mice. We identified a distinct group of miRNAs that is specifically regulated by Ago2 in the striatum. Comparison of miRNAs affected by Ago2 deficiency with miRNAs that are enriched and/or up-regulated in Drd2-neurons in response to cocaine identified a set of miRNAs that are likely to play a role in cocaine addiction

Controlling for contamination in re-sequencing studies with a reproducible web-based phylogenetic approach

Polymorphism discovery is a routine application of next-generation sequencing technology where multiple samples are sent to a service provider for library preparation, subsequent sequencing, and bioinformatic analyses. The decreasing cost and advances in multiplexing approaches have made it possible to analyze hundreds of samples at a reasonable cost. However, because of the manual steps involved in the initial processing of samples and handling of sequencing equipment, cross-contamination remains a significant challenge. It is especially problematic in cases where polymorphism frequencies do not adhere to diploid expectation, for example, heterogeneous tumor samples, organellar genomes, as well as during bacterial and viral sequencing. In these instances, low levels of contamination may be readily mistaken for polymorphisms, leading to false results. Here we describe practical steps designed to reliably detect contamination and uncover its origin, and also provide new, Galaxy-based, readily accessible computational tools and workflows for quality control. All results described in this report can be reproduced interactively on the web as described at http://usegalaxy.org/contamination

An accurate test for homogeneity of odds ratios based on Cochran's Q-statistic

Background: A frequently used statistic for testing homogeneity in a meta-analysis of K independent studies is Cochran's Q. For a standard test of homogeneity the Q statistic is referred to a chi-square distribution with K - 1 degrees of freedom. For the situation in which the effects of the studies are logarithms of odds ratios, the chi-square distribution is much too conservative for moderate size studies, although it may be asymptotically correct as the individual studies become large. Methods: Using a mixture of theoretical results and simulations, we provide formulas to estimate the shape and scale parameters of a gamma distribution to t the distribution of Q. Results: Simulation studies show that the gamma distribution is a good approximation to the distribution for Q. Conclusions: : Use of the gamma distribution instead of the chi-square distribution for Q should eliminate inaccurate inferences in assessing homogeneity in a meta-analysis. (A computer program for implementing this test is provided.) This hypothesis test is competitive with the Breslow-Day test both in accuracy of level and in power

Direct numerical simulation of turbulent counterflow nonpremixed flames

This paper presents our recent progress in terascale three-dimensional simulations of turbulent nonpremixed flames in the presence of a mean flow strain and fine water droplets. Under the ongoing university collaborative project supported by the DOE SciDAC Program [1] along with the INCITE 2007 Project [2], the study aims at bringing the state-of-the-art high-fidelity simulation capability to the next level by incorporating various advanced physical models for soot formation, radiative heat transfer, and lagrangian spray dynamics, to an unprecedented degree of detail in high-fidelity simulation application. The targeted science issue is fundamental characteristics of flame suppression by the complex interaction between turbulence, chemistry, radiation, and water spray. The high quality simulation data with full consideration of multi-physics processes will allow fundamental understanding of the key physical and chemical mechanisms in the flame quenching behavior. In this paper, recent efforts on numerical algorithms and model development toward the targeted terascale 3D simulations are discussed and some preliminary results are presented.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/58180/2/jpconf7_78_012029.pd