4,696 research outputs found
Performance of a highly sensitive optical waveguide Mach-Zehnder interferometer immunosensor
We describe a highly sensitive sensor which uses the evanescent field of a reusable planar optical waveguide as the sensing element. The waveguide used is optimized to obtain a steep dependence of the propagation velocity on the refractive-index profile near the surface. The adsorption of a layer of proteins thus results in a phase change, which is measured interferometrically using a Mach-Zehnder interferometer set-up. The stability of the interferometer is such that phase changes = (1 × 10-2)2pi per hour can be measured. Immunoreactions have been monitored down to concentrations of 5 × 10-11 M of a 40 kDa protein
Development of an optical waveguide interferometric immunosensor
A Mach-Zehnder interferometer is presented, which uses the evanescent field of a planar optical waveguide as the sensing element. Changes in the refractive index profile occurring in the immediate vicinity of the waveguide surface cause the propagation velocity of the light passing through it to change. This is measured interferometrically. Adsorption processes of antibodies onto the waveguide surface as well as immunoreactions have been monitored. Concentrations of 2.5 × 10¿8 M (1 × 10-3 mg/ml) of the antigen HCG (molecular weight = 39 600) have been measured so far
Refractive index and layer thickness of an adsorbing protein as reporters of monolayer formation
A method is presented for a separate real-time determination of refractive index and layer thickness of an adsorbing thin layer. The changing angular deflections of TE and TM modes in a dedicated planar waveguide structure are measured. A resolution of 0.01 in the refractive index and 0.5 nm in the average thickness is obtained. The method is illustrated with experimental results on the binding of an antibody to the substrate, both in a physisorption and in an immunoreaction. In the latter, results are consistent with an end-on binding of the antibody to the surface
Temperature dependence of Raman vibrational bandwidths in poly(rA) and rAMP
Isotropic and anisotropic spontaneous Raman spectra were obtained from solutions of poly(ra) and rAMP in buffer. The temperature dependence of these spectra was measured to elucidate the influence of macromolecular dynamics and solvent dynamics on the bandwidths of base vibrations in the single stranded polynucleotide poly(rA). The temperature dependence of a bandwidth depends upon the particular vibration under study. The bands can for the larger part be described by Lorentz functions. When fitted by Voigt functions, maximally 10% of each bandprofile of the adenine base vibrations can be attributed to a Gaussian component. The second moment has been determined from the spectra for the 725 cm¿1 band. From the second moment and the bandwidth, we were able to deduce that the vibrational oscillator is in the fast modulation limit. The determined timescale (perturbation correlation time 0.13 ps) eliminate perturbations connected to long range diffusion like concentration fluctuations (timescale in the order of 10 ps). The spectra were analyzed by an extensive curve fitting procedure providing accurate bandparameters (position, width and integrated intensity). The 725 cm¿1 band of adenine has a bandwidth which is dependent upon the degree of polymerization. In RAMP it is 17.6 cm¿1, in stacked (i.e. low temperature 5°C) poly(rA) it is 11.5 cm¿1. The bandwidth of the adenine vibration at 1336 cm¿1 cm¿1 has a temperature dependence which is similar to the intensity changes of the Raman and the absorption hypochromic effect as a function of temperature. The melting transition can therefore be followed by the changes in bandwidth of suitable vibrations
An improved optical method for surface plasmon resonance experiments
In this paper an inexpensive optical device is described, which is capable of measuring the optical reflectance at different angles, while keeping the laser spot stationary at one point of the surface. This is accomplished by applying cylindrical optics. Its use is demonstrated in a surface plasmon resonance (SPR) sensor. A coil-operated vibrating mirror is used to obtain an angle scan of about 4 degrees. The angle of minimum reflectance can be detected with an accuracy of approximately 2 × 10−3 degrees. Despite the use of simple optical components, disturbance of laser beam parallelism is no more than 0.02 degrees. Displacement of the laser spot at the surface during the angle scan is kept within 0.2 mm. The device eliminates disturbances due to surface irregularities in measurements.\u
Accretion disks in Algols: progenitors and evolution
There are only a few Algols with measured accretion disk parameters. These
measurements provide additional constraints for tracing the origin of
individual systems, narrowing down the initial parameter space. We investigate
the origin and evolution of 6 Algol systems with accretion disks to find the
initial parameters and evolutionary constraints for them. With a modified
binary evolution code, series of close binary evolution are calculated to
obtain the best match for observed individual systems. Initial parameters for 6
Algol systems with accretion disks were determined matching both the present
system parameters and the observed disk characteristics. When RLOF starts
during core hydrogen burning of the donor, the disk lifetime was found to be
short. The disk luminosity is comparable to the luminosity of the gainer during
a large fraction of the disk lifetime.Comment: 8 pages, 6 figures , accepted by A&
Raman anemometry, a method for component-selective velocity measurements of particles in a flow
An anemometer for the measurement of the velocity of particles of different substances in a flow, separate and apart from that of the flow itself, is described. The substances are distinguished by Raman scattering. The velocity is obtained by relating the autocorrelated scattering signal to the known laser beam profile
A Raman spectroscopic study of the interaction between nucleotides and the DNA binding protein gp32 of bacteriophage T4
Raman spectra of the bacteriophage T4 denaturing protein gp32, its complex with the polynucleotides poly(rA), poly(dA), poly(dT), poly(rU), and poly(rC), and with the oligonucleotides (dA)8 and (dA)2, were recorded and interpreted. According to an analysis of the gp32 spectra with the reference intensity profiles of Alix and co-workers [M. Berjot, L. Marx, and A.J.P. Alix (1985) J. Ramanspectrosc., submitted; A.J.P. Alix, M. Berjot, and J. Marx (1985) in Spectroscopy of Biological Molecules, A. J. P. Alix, L. Bernard, and M. Manfait, Eds., pp. 149-154], 1 gp32 contains ≈ 45% helix, ≈ 40% β-sheet, and 15% undefined structure. Aggregation of gp32 at concentrations higher than 40 mg/mL leads to a coordination of the phenolic OH groups of 4-6 tyrosines and of all the sulfhydryl (SH) groups present in the protein with the COO- groups of protein. The latter coordination persists even at concentrations as low as 1 mg/mL. In polynucleotide-protein complexes the nucleotide shields the 4-6 tyrosine residues from coordination by the COO- groups even at high protein concentration. The presence of the nucleotide causes no shielding of the SH groups. With Raman difference spectroscopy it is shown that binding of the protein to a single-stranded nucleotide involves both tyrosine and trytophan residues. A change in the secondary structure of the protein upon binding is observed. In the complex, gp32 contains more -sheet structure than when uncomplexed. A comparison of the spectra of complexed poly(rA) and poly(dA) with the spectra of their solution conformations at 15°C reveals that in both polynucleotides the phosphodiester vibration changes upon complex formation in the same way as upon a transition from a regular to a more disordered conformation. Distortion of the phosphate-sugar-base conformation occurs upon complex formation, so that the spectra of poly(rA) and poly(dA) are more alike in the complex than they are in the free polynucleotides. The decrease in intensity of the Raman bands at 1304 cm-1 in poly(rA), at 1230 cm-1 in poly(rU), and at 1240 and 1378 cm-1 of poly(dT) may be indicative of increased stacking interactions in the complex. No influence of the nucleotide chain length upon the Raman spectrum of gp322 in the complex was detected. Both the nucleotide lines and the protein lines in the spectrum of a complex are identical in poly(dA) and (dA)8
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