Trajectory structures and transport

The special problem of transport in 2-dimensional divergence-free stochastic velocity fields is studied by developing a statistical approach, the nested subensemble method. The nonlinear process of trapping determined by such fields generates trajectory structures whose statistical characteristics are determined. These structures strongly influence the transport.Comment: Latex file 19 pages, includes 12 EPS figures. Extended version of the invited talk at the ITCPP, Santorini, 200

Soliton self-modulation of the turbulence amplitude and plasma rotation

The space-uniform amplitude envelope of the Ion Temperature Gradient driven turbulence is unstable to small perturbations and evolves to nonuniform, soliton-like modulated profiles. The induced poloidal asymmetry of the transport fluxes can generate spontaneous poloidal spin-up of the tokamak plasma.Comment: Latex file, 66 pages, 24 postscript figures included. New section on rotation five new figures, comparison with magnetic pumping dampin

The asymptotic quasi-stationary states of the two-dimensional magnetically confined plasma and of the planetary atmosphere

We derive the differential equation governing the asymptotic quasi-stationary states of the two dimensional plasma immersed in a strong confining magnetic field and of the planetary atmosphere. These two systems are related by the property that there is an intrinsic constant length: the Larmor radius and respectively the Rossby radius and a condensate of the vorticity field in the unperturbed state related to the cyclotronic gyration and respectively to the Coriolis frequency. Although the closest physical model is the Charney-Hasegawa-Mima (CHM) equation, our model is more general and is related to the system consisting of a discrete set of point-like vortices interacting in plane by a short range potential. A field-theoretical formalism is developed for describing the continuous version of this system. The action functional can be written in the Bogomolnyi form (emphasizing the role of Self-Duality of the asymptotic states) but the minimum energy is no more topological and the asymptotic structures appear to be non-stationary, which is a major difference with respect to traditional topological vortex solutions. Versions of this field theory are discussed and we find arguments in favor of a particular form of the equation. We comment upon the significant difference between the CHM fluid/plasma and the Euler fluid and respectively the Abelian-Higgs vortex models.Comment: Latex 126 pages, 7 eps figures included. Discussion on various forms of the equatio

An extended hybrid magnetohydrodynamics gyrokinetic model for numerical simulation of shear Alfv\'en waves in burning plasmas

Adopting the theoretical framework for the generalized fishbonelike dispersion relation, an extended hybrid magnetohydrodynamics gyrokinetic simulation model has been derived analytically by taking into account both thermal ion compressibility and diamagnetic effects in addition to energetic particle kinetic behaviors. The extended model has been used for implementing an eXtended version of Hybrid Magnetohydrodynamics Gyrokinetic Code (XHMGC) to study thermal ion kinetic effects on Alfv\'enic modes driven by energetic particles, such as kinetic beta induced Alfv\'en eigenmodes in tokamak fusion plasmas

Androgenic alopecia; the risk–benefit ratio of Finasteride

Finasteride is currently approved and largely used as a therapeutic option for androgenetic alopecia. Apparently a safe drug and effective at the onset of its application, several concerns have since appeared over the years regarding the frequency and magnitude of finasteride adverse effects, which in some cases appear irreversible even after drug termination. This paper discusses the use of finasteride for androgenic alopecia from two distinct perspectives. On the one hand, androgenic alopecia is a condition that especially affects a person’s self-image and esteem, aspects that are subjectively-constructed and thus relative and changeable. On the other hand, this condition involves a multifactorial etiology, with androgens being only partly responsible. Because androgens have important and unique physiological roles within the body, any procedure that results in androgenic suppression should be advised with caution. Furthermore, adverse effects induced by finasteride are neither fully documented nor easily treated. Finally, as alternative therapeutic approaches (such as topical finasteride) become available, the oral administration of finasteride for androgenic alopecia should, in our opinion, be reevaluated. Due to such concerns, a detailed and informed discussion should take place with patients considering therapy with finasteride for androgenic alopecia

Fingerprints of Random Flows?

We consider the patterns formed by small rod-like objects advected by a random flow in two dimensions. An exact solution indicates that their direction field is non-singular. However, we find from simulations that the direction field of the rods does appear to exhibit singularities. First, ` scar lines' emerge where the rods abruptly change direction by $\pi$. Later, these scar lines become so narrow that they ` heal over' and disappear, but their ends remain as point singularities, which are of the same type as those seen in fingerprints. We give a theoretical explanation for these observations.Comment: 21 pages, 11 figure

Performance of a Coal Refuse Embankment

Continuous determinations of density, moisture content, and permeability through a 140-foot high coarse refuse embankment impounding slurry were made. The density determinations were made with nuclear moisture-density depth gauges continuously throughout 120-foot depth of the embankment. The permeability tests were made with a special packer permeability device and were conducted throughout the 120-foot depth of the embankment. Compaction density tests were made during compaction of the refuse. Comparisons were made to design, as-compacted, and in-place permeabilities, densities, and phreatic surface within the embankment. The study shows that coarse refuse embankments compacted in roughly 18-inch lifts with a special dozer and haulage equipment perform well in terms of comparisons of in-situ parameters to design parameters for seepage, density, and strength

Connecting protein and mRNA burst distributions for stochastic models of gene expression

The intrinsic stochasticity of gene expression can lead to large variability in protein levels for genetically identical cells. Such variability in protein levels can arise from infrequent synthesis of mRNAs which in turn give rise to bursts of protein expression. Protein expression occurring in bursts has indeed been observed experimentally and recent studies have also found evidence for transcriptional bursting, i.e. production of mRNAs in bursts. Given that there are distinct experimental techniques for quantifying the noise at different stages of gene expression, it is of interest to derive analytical results connecting experimental observations at different levels. In this work, we consider stochastic models of gene expression for which mRNA and protein production occurs in independent bursts. For such models, we derive analytical expressions connecting protein and mRNA burst distributions which show how the functional form of the mRNA burst distribution can be inferred from the protein burst distribution. Additionally, if gene expression is repressed such that observed protein bursts arise only from single mRNAs, we show how observations of protein burst distributions (repressed and unrepressed) can be used to completely determine the mRNA burst distribution. Assuming independent contributions from individual bursts, we derive analytical expressions connecting means and variances for burst and steady-state protein distributions. Finally, we validate our general analytical results by considering a specific reaction scheme involving regulation of protein bursts by small RNAs. For a range of parameters, we derive analytical expressions for regulated protein distributions that are validated using stochastic simulations. The analytical results obtained in this work can thus serve as useful inputs for a broad range of studies focusing on stochasticity in gene expression