A deep learning approach to photo–identification demonstrates high performance on two dozen cetacean species

We thank the countless individuals who collected and/or processed the nearly 85,000 images used in this study and those who assisted, particularly those who sorted these images from the millions that did not end up in the catalogues. Additionally, we thank the other Kaggle competitors who helped develop the ideas, models and data used here, particularly those who released their datasets to the public. The graduate assistantship for Philip T. Patton was funded by the NOAA Fisheries QUEST Fellowship. This paper represents HIMB and SOEST contribution numbers 1932 and 11679, respectively. The technical support and advanced computing resources from University of Hawaii Information Technology Services—Cyberinfrastructure, funded in part by the National Science Foundation CC* awards # 2201428 and # 2232862 are gratefully acknowledged. Every photo–identification image was collected under permits according to relevant national guidelines, regulation and legislation.Peer reviewedPublisher PD

Adding 6 months of androgen deprivation therapy to postoperative radiotherapy for prostate cancer: a comparison of short-course versus no androgen deprivation therapy in the RADICALS-HD randomised controlled trial

Background Previous evidence indicates that adjuvant, short-course androgen deprivation therapy (ADT) improves metastasis-free survival when given with primary radiotherapy for intermediate-risk and high-risk localised prostate cancer. However, the value of ADT with postoperative radiotherapy after radical prostatectomy is unclear. Methods RADICALS-HD was an international randomised controlled trial to test the efficacy of ADT used in combination with postoperative radiotherapy for prostate cancer. Key eligibility criteria were indication for radiotherapy after radical prostatectomy for prostate cancer, prostate-specific antigen less than 5 ng/mL, absence of metastatic disease, and written consent. Participants were randomly assigned (1:1) to radiotherapy alone (no ADT) or radiotherapy with 6 months of ADT (short-course ADT), using monthly subcutaneous gonadotropin-releasing hormone analogue injections, daily oral bicalutamide monotherapy 150 mg, or monthly subcutaneous degarelix. Randomisation was done centrally through minimisation with a random element, stratified by Gleason score, positive margins, radiotherapy timing, planned radiotherapy schedule, and planned type of ADT, in a computerised system. The allocated treatment was not masked. The primary outcome measure was metastasis-free survival, defined as distant metastasis arising from prostate cancer or death from any cause. Standard survival analysis methods were used, accounting for randomisation stratification factors. The trial had 80% power with two-sided α of 5% to detect an absolute increase in 10-year metastasis-free survival from 80% to 86% (hazard ratio [HR] 0·67). Analyses followed the intention-to-treat principle. The trial is registered with the ISRCTN registry, ISRCTN40814031, and ClinicalTrials.gov, NCT00541047. Findings Between Nov 22, 2007, and June 29, 2015, 1480 patients (median age 66 years [IQR 61–69]) were randomly assigned to receive no ADT (n=737) or short-course ADT (n=743) in addition to postoperative radiotherapy at 121 centres in Canada, Denmark, Ireland, and the UK. With a median follow-up of 9·0 years (IQR 7·1–10·1), metastasis-free survival events were reported for 268 participants (142 in the no ADT group and 126 in the short-course ADT group; HR 0·886 [95% CI 0·688–1·140], p=0·35). 10-year metastasis-free survival was 79·2% (95% CI 75·4–82·5) in the no ADT group and 80·4% (76·6–83·6) in the short-course ADT group. Toxicity of grade 3 or higher was reported for 121 (17%) of 737 participants in the no ADT group and 100 (14%) of 743 in the short-course ADT group (p=0·15), with no treatment-related deaths. Interpretation Metastatic disease is uncommon following postoperative bed radiotherapy after radical prostatectomy. Adding 6 months of ADT to this radiotherapy did not improve metastasis-free survival compared with no ADT. These findings do not support the use of short-course ADT with postoperative radiotherapy in this patient population

Duration of androgen deprivation therapy with postoperative radiotherapy for prostate cancer: a comparison of long-course versus short-course androgen deprivation therapy in the RADICALS-HD randomised trial

Background Previous evidence supports androgen deprivation therapy (ADT) with primary radiotherapy as initial treatment for intermediate-risk and high-risk localised prostate cancer. However, the use and optimal duration of ADT with postoperative radiotherapy after radical prostatectomy remains uncertain. Methods RADICALS-HD was a randomised controlled trial of ADT duration within the RADICALS protocol. Here, we report on the comparison of short-course versus long-course ADT. Key eligibility criteria were indication for radiotherapy after previous radical prostatectomy for prostate cancer, prostate-specific antigen less than 5 ng/mL, absence of metastatic disease, and written consent. Participants were randomly assigned (1:1) to add 6 months of ADT (short-course ADT) or 24 months of ADT (long-course ADT) to radiotherapy, using subcutaneous gonadotrophin-releasing hormone analogue (monthly in the short-course ADT group and 3-monthly in the long-course ADT group), daily oral bicalutamide monotherapy 150 mg, or monthly subcutaneous degarelix. Randomisation was done centrally through minimisation with a random element, stratified by Gleason score, positive margins, radiotherapy timing, planned radiotherapy schedule, and planned type of ADT, in a computerised system. The allocated treatment was not masked. The primary outcome measure was metastasis-free survival, defined as metastasis arising from prostate cancer or death from any cause. The comparison had more than 80% power with two-sided α of 5% to detect an absolute increase in 10-year metastasis-free survival from 75% to 81% (hazard ratio [HR] 0·72). Standard time-to-event analyses were used. Analyses followed intention-to-treat principle. The trial is registered with the ISRCTN registry, ISRCTN40814031, and ClinicalTrials.gov , NCT00541047 . Findings Between Jan 30, 2008, and July 7, 2015, 1523 patients (median age 65 years, IQR 60–69) were randomly assigned to receive short-course ADT (n=761) or long-course ADT (n=762) in addition to postoperative radiotherapy at 138 centres in Canada, Denmark, Ireland, and the UK. With a median follow-up of 8·9 years (7·0–10·0), 313 metastasis-free survival events were reported overall (174 in the short-course ADT group and 139 in the long-course ADT group; HR 0·773 [95% CI 0·612–0·975]; p=0·029). 10-year metastasis-free survival was 71·9% (95% CI 67·6–75·7) in the short-course ADT group and 78·1% (74·2–81·5) in the long-course ADT group. Toxicity of grade 3 or higher was reported for 105 (14%) of 753 participants in the short-course ADT group and 142 (19%) of 757 participants in the long-course ADT group (p=0·025), with no treatment-related deaths. Interpretation Compared with adding 6 months of ADT, adding 24 months of ADT improved metastasis-free survival in people receiving postoperative radiotherapy. For individuals who can accept the additional duration of adverse effects, long-course ADT should be offered with postoperative radiotherapy. Funding Cancer Research UK, UK Research and Innovation (formerly Medical Research Council), and Canadian Cancer Society

The social and ecological significance of Hervey Bay Queensland for eastern Australian humpback whales (\u3cem\u3eMegaptera novaeangliae\u3c/em\u3e)

This study provides the first detailed long-term research on the seasonal pod characteristics, seasonal social behaviour and temporal segregation of different reproductive and maturational classes of humpback whales in Hervey Bay (Queensland, Australia). The overall aim was to investigate the importance of the Bay for particular classes of humpback whales. This study revealed that Hervey Bay is an important habitat for mature females accompanying immature whales early in the season and mothers with calves later in the season. Hervey Bay is neither a terminal destination nor a calving or breeding area but rather a stopover early in the southern migration

A southern right whale, (Eubalaena australis), in Hervey Bay, QLD and Ballina, NNSW

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Site-specific female-biased sex ratio of humpback whales during a stopover early in the southern migration

Previous research on humpback whales (Megaptera novaeangliae (Borowski, 1781)), in both the Northern and Southern Hemispheres, has reported site-specific male-biased sex ratios in breeding grounds and along migratory corridors. However, one recent Southern Hemisphere study reported a female-biased sex ratio in a feeding area within a coastal migratory corridor, indicating that females may preferentially occupy some habitats. We investigated the classes and relative seasonal timing of humpback whales using Hervey Bay as a stopover early in the southern migration. Modeling and analyzes were undertaken using data from resighting histories of 361 individually identified whales between 1992 and 2009. The data consisted of 2,131 sightings categorized by either sex, age, reproductive or maturational status. A female-biased sex ratio of 2.94:1 indicates that Hervey Bay is a preferential stopover for females. The data revealed that the bay is important for mature females who co-occur with immature males and females during August. While during September and October mothers with calves accompanied by a few escorts dominate the Bay. Immature males and females socialize with mature females during August and September. The data support the hypothesis that habitat preferences and differential migration of females and males provides a plausible explanation for site-specific sex-bias in breeding grounds, migratory stopovers and along migratory corridors.The accepted manuscript in pdf format is listed with the files at the bottom of this page. The presentation of the authors' names and (or) special characters in the title of the manuscript may differ slightly between what is listed on this page and what is listed in the pdf file of the accepted manuscript; that in the pdf file of the accepted manuscript is what was submitted by the author

Movement of two humpback whales (Megaptera novaeangliae) satellite-radio tagged off Eden, NSW and matched by photo-identification with the Hervey Bay catalogue

Photo-identification studies of humpback whales off eastern Australia show low levels of movement between eastern Australia and New Caledonia whales. Some eastern Australian humpback whales migrate through the southern waters of New Zealand on route to Antarctic feeding areas. Photoidentification studies have shown that the waters near the Balleny Islands, in Antarctic Area V, are a feeding area for some eastern Australian humpback whales. However, such studies provide no details of the routes taken between New Zealand and Australia and to and from Antarctic feeding areas. Sixteen humpback whales were satellite-linked radio tagged off Eden NSW in 2008. The number and duration of the tag positions reported revealed complete migratory transits from Eden to Antarctic Area V and IV feeding areas. Photographs of the Eden humpback whales were compared to the Hervey Bay photo-identification catalogue and yielded two matches, identified from lateral body marks and dorsal fins. This study provides the first evidence that during the southern migration some humpback whales stopover at Hervey Bay and also migrate past Eden on the NSW coast. The tracks of the two whales from Eden showed that a male sighted in Hervey Bay in the same season moved southeast from Eden towards southern New Zealand. A female with site-fidelity to Hervey Bay in previous seasons, accompanied by a calf when the tag was deployed, moved down and around the coast of Victoria, across Bass Strait and then southwest into the Antarctic Area IV feeding area. Eden may be a migratory hub for humpback whales departing from and approaching the east coast of Australia. This study suggests that eastern Australian humpback whales may exhibit a more diverse range of feeding destinations, after leaving Australian coastal waters, than previously reported

Seasonal changes in pod characteristics of eastern Australian humpback whales (Megaptera novaeangliae), Hervey Bay 1992–2005

We investigated the characteristics and composition of 4,506 humpback whale pods observed in Hervey Bay between 1992 and 2005. We use these data to analyze and model the variability of pod size and composition, and to assess the importance of Hervey Bay for particular classes of humpback whales. Pods ranged in size from one to nine individuals. Pairs were the most frequent pod type (1,344, 29.8%), followed by mother-calf alone (1,249, 27.7%), trios (759, 16.8%), singletons (717, 15.9%), and 4+ whales (437, 9.7%). Of the 4,506 pods, calves were present in 40%, and 10.8% of all pods had one or more escorts present. Of the 1,804 pods observed with calves present, 1,251 (69.4%) were mothers alone with their calves. The size and composition of pods in the study area varied significantly as the season progressed. Pods with calves present were rarely recorded early in the season but dominated later in the season. A significant increase over years in larger groups may be related to social and behavioral changes as the population expands. The data indicate that Hervey Bay is important to immature males and females early in the season, to mature males and females in mid-season, and to mother-calf pairs (either alone or with escorts) in mid-to-late season