Medium-resolution multispectral data from sentinel-2 to assess the damage and the recovery time of late frost on Vineyards

In a climate-change context, the advancement of phenological stages may endanger viticultural areas in the event of a late frost. This study evaluated the potential of satellite-based remote sensing to assess the damage and the recovery time after a late frost event in 2017 in northern Italian vineyards. Several vegetation indices (VIs) normalized on a two-year dataset (2018-2019) were compared over a frost-affected area (F) and a control area (NF) using unpaired two-sample t-test. Furthermore, the must quality data (total acidity, sugar content and pH) of F and NF were analyzed. The VIs most sensitive in the detection of frost damage were Chlorophyll Absorption Ratio Index (CARI), Enhanced Vegetation Index (EVI), and Modified Triangular Vegetation Index 1 (MTVI1) (-5.26%,-16.59%, and-5.77% compared to NF, respectively). The spectral bands Near-Infrared (NIR) and Red Edge 7 were able to identify the frost damage (-16.55 and-16.67% compared to NF, respectively). Moreover, CARI, EVI, MTVI1, NIR, Red Edge 7, the Normalized Difference Vegetation Index (NDVI) and the Modified Simple Ratio (MSR) provided precise information on the full recovery time (+17.7%, +22.42%, +29.67%, +5.89%, +5.91%, +16.48%, and +8.73% compared to NF, respectively) approximately 40 days after the frost event. The must analysis showed that total acidity was higher (+5.98%), and pH was lower (-2.47%) in F compared to NF. These results suggest that medium-resolution multispectral data from Sentinel-2 constellation may represent a cost-effective tool for frost damage assessment and recovery management

La fertilita delle gemme in Vitis vinifera L. cv Carm\ue8nere

Il recente interesse verso sistemi di allevamento a potatura corta, maturato da esigenze tecniche ed economiche, ha richiamato l'attenzione sul problema della bassa fertilit\ue0 delle gemme nella zona basale dei tralci. Alcune considerazioni di campagna farebbero, inoltre, pensare che alcuni vitigni usualmente considerati a bassa o bassissima fertilit\ue0 basale non siano, almeno in alcune situazioni, da considerarsi tali. Sono state condotte delle osservazioni durante Ie stagioni vegetative del triennio 2002 su un vigneto adulto della cv Carm\ue8nere, allevato con due diversi sisterni di allevamento, uno a potatura lunga (Doppio capovolto) e l'altro a potatura corta (Cordone speronato) al fine di osservare l'effetto della diversa forma di allevamento sulla fertilit\ue0 delle gemme. I risultati delle osservazioni effettuate hanno messo in evidenza che non \ue8 possibile generalizzare il comportamento di questo vitigno poiche la fertilita dei nodi basali puo variare notevolmente in relazione a fattori tecnici (carica di gemme per ceppo e criteri di potatura, espressione vegetativa indotta, potatura verde) ed ambientali (clima ed orografia del sito di coltivazione

Grape berry responses to sequential flooding and heatwave events: a physiological, transcriptional, and metabolic overview

Grapevine cultivation, such as the whole horticulture, is currently challenged by several factors, among which the extreme weather events occurring under the climate change scenario are the most relevant. Within this context, the present study aims at characterizing at the berry level the physiological response of Vitis vinifera cv. Sauvignon Blanc to sequential stresses simulated under a semi-controlled environment: flooding at bud-break followed by multiple summer stress (drought plus heatwave) occurring at pre-vèraison. Transcriptomic and metabolomic assessments were performed through RNASeq and NMR, respectively. A comprehensive hormone profiling was also carried out. Results pointed out a different response to the heatwave in the two situations. Flooding caused a developmental advance, determining a different physiological background in the berry, thus affecting its response to the summer stress at both transcriptional levels, with the upregulation of genes involved in oxidative stress responses, and metabolic level, with the increase in osmoprotectants, such as proline and other amino acids. In conclusion, sequential stress, including a flooding event at bud-break followed by a summer heatwave, may impact phenological development and berry ripening, with possible consequences on berry and wine quality. A berry physiological model is presented that may support the development of sustainable vineyard management solutions to improve the water use efficiency and adaptation capacity of actual viticultural systems to future scenario

Infrared thermography to estimate vine water status: optimizing canopy measurements and thermal indices for the varieties Merlot and Moscato in northern Italy

This study investigated the effectiveness of infrared thermography to estimate water status in Merlot and Moscato grown in northeast Italy by comparing the crop water stress index (CWSI) and the stomatal conductance index (IG). The influence of the portion of the canopy in which the thermal images were captured (sunlit or shaded) was also investigated. During the 2018 growing season, potted vines were subjected to three irrigation treatments: T0 = 100% of daily water usage restored; T1 = 50% of daily water usage restored; and T2 = 30% of daily water usage restored. Measurements included stomatal conductance (gs), stem water potential (SWP), and thermal imagery. Results showed that both the CWSI and IG indices were effective in discriminating the irrigation treatments in Moscato and Merlot. CWSI showed higher correlations with gs and SWP compared to IG, especially in Moscato. CWSI was less influenced by the portion of the canopy the image was taken on. In general, Moscato showed greater differences in gs, SWP, and the thermal indices between the three irrigation treatments. This study suggests that the efficacy of thermography in estimating vine water status depends on the variety and its stomatal control physiology.Nicola Belfiore, Rosanna Vinti, Lorenzo Lovat, Walter Chitarra, Diego Tomasi, Roberta de Bei, Franco Meggio, and Federica Gaiott

A multicentre case control study on complicated coeliac disease: two different patterns of natural history, two different prognoses.

Abstract Background: Coeliac disease is a common enteropathy characterized by an increased mortality mainly due to its complications. The natural history of complicated coeliac disease is characterised by two different types of course: patients with a new diagnosis of coeliac disease that do not improve despite a strict gluten-free diet (type A cases) and previously diagnosed coeliac patients that initially improved on a gluten-free diet but then relapsed despite a strict diet (type B cases). Our aim was to study the prognosis and survival of A and B cases. Methods: Clinical and laboratory data from coeliac patients who later developed complications (A and B cases) and sex- and age-matched coeliac patients who normally responded to a gluten-free diet (controls) were collected among 11 Italian centres. Results: 87 cases and 136 controls were enrolled. Complications tended to occur rapidly after the diagnosis of coeliac disease and cumulative survival dropped in the first months after diagnosis of complicated coeliac disease. Thirty-seven cases died (30/59 in group A, 7/28 in group B). Type B cases presented an increased survival rate compared to A cases. Conclusions: Complicated coeliac disease is an extremely serious condition with a high mortality and a short survival. Survival depends on the type of natural history. Keyword: Celiac disease, Complications, EATL, Prognosis, Glutens, Gluten-free die

LY 294002 inhibits adenosine receptor activation by a mechanism independent of effects on PI-3 kinase or casein kinase II

Adenosine reduces both evoked and spontaneous calcium-dependent acetylcholine (ACh) release through a mechanism downstream of calcium entry at amphibian motor nerve endings (Silinsky EM. J Physiol 1984; 346: 243-6). LY 294002 (2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-one), an inhibitor of both phosphoinositide-3 kinase (PI-3 kinase) and casein kinase II, has been reported to increase spontaneous ACh release reflected in miniature endplate potential (MEPP) frequencies independently of intraterminal calcium at the frog neuromuscular junction (Rizzoli SO, Betz WJ. J Neurosci 2002; 22: 10680-). It has been suggested that the increase in MEPP frequency caused by LY 294002, is mediated through an action on synaptotagmins, vesicle associated calcium sensors believed to trigger synaptic vesicle exocytosis. We thus examined the effects of adenosine on MEPP frequencies and evoked ACh release reflected as endplate potentials (EPPs) in order to determine if the presumed calcium-independent ACh release is affected by adenosine. We also wanted to determine if PI-3 kinase or casein kinase II is involved in mediating or modulating the inhibitory effects of adenosine. To these ends, we examined the effects of adenosine in the presence of LY 294002, wortmannin (a highly selective the PI-3 kinase inhibitor), or DRB (5,6-dichlorobenzimidazole riboside, an inhibitor of casein kinase II). LY 294002 reduced the sensitivity of both MEPP frequencies and the nerve-evoked calcium dependent EPPs to adenosine. The occlusive effects of LY 294002 on the actions of adenosine on MEPPs and EPPs were overcome by increasing adenosine concentration. Neither wortmannin nor DRB had any effect on the sensitivity of the EPPs to adenosine indicating that neither PI-3 kinase nor casein kinase II inhibition mediates the reduction in motor-nerve terminal sensitivity to adenosine produced by LY 294002. The results indicate a competitive relationship between LY 294002 and adenosine at A1 receptors at the frog neuromuscular junction. This effect is independent of the previously described effects of LY 294002 on the exocytotic process, and is also independent of PI-3 kinase or casein kinase II

Role of Plant-Specific N-Terminal Domain of Maize CK2β1 Subunit in CK2β Functions and Holoenzyme Regulation

Protein kinase CK2 is a highly pleiotropic Ser/Thr kinase ubiquituous in eukaryotic organisms. CK2 is organized as a heterotetrameric enzyme composed of two types of subunits: the catalytic (CK2α) and the regulatory (CK2β). The CK2β subunits enhance the stability, activity and specificity of the holoenzyme, but they can also perform functions independently of the CK2 tetramer. CK2β regulatory subunits in plants differ from their animal or yeast counterparts, since they present an additional specific N-terminal extension of about 90 aminoacids that shares no homology with any previously characterized functional domain. Sequence analysis of the N-terminal domain of land plant CK2β subunit sequences reveals its arrangement through short, conserved motifs, some of them including CK2 autophosphorylation sites. By using maize CK2β1 and a deleted version (ΔNCK2β1) lacking the N-terminal domain, we have demonstrated that CK2β1 is autophosphorylated within the N-terminal domain. Moreover, the holoenzyme composed with CK2α1/ΔNCK2β1 is able to phosphorylate different substrates more efficiently than CK2α1/CK2β1 or CK2α alone. Transient overexpression of CK2β1 and ΔNCK2β1 fused to GFP in different plant systems show that the presence of N-terminal domain enhances aggregation in nuclear speckles and stabilizes the protein against proteasome degradation. Finally, bimolecular fluorescence complementation (BiFC) assays show the nuclear and cytoplasmic location of the plant CK2 holoenzyme, in contrast to the individual CK2α/β subunits mainly observed in the nucleus. All together, our results support the hypothesis that the plant-specific N-terminal domain of CK2β subunits is involved in the down-regulation of the CK2 holoenzyme activity and in the stabilization of CK2β1 protein. In summary, the whole amount of data shown in this work suggests that this domain was acquired by plants for regulatory purposes

HIV Protein Sequence Hotspots for Crosstalk with Host Hub Proteins

HIV proteins target host hub proteins for transient binding interactions. The presence of viral proteins in the infected cell results in out-competition of host proteins in their interaction with hub proteins, drastically affecting cell physiology. Functional genomics and interactome datasets can be used to quantify the sequence hotspots on the HIV proteome mediating interactions with host hub proteins. In this study, we used the HIV and human interactome databases to identify HIV targeted host hub proteins and their host binding partners (H2). We developed a high throughput computational procedure utilizing motif discovery algorithms on sets of protein sequences, including sequences of HIV and H2 proteins. We identified as HIV sequence hotspots those linear motifs that are highly conserved on HIV sequences and at the same time have a statistically enriched presence on the sequences of H2 proteins. The HIV protein motifs discovered in this study are expressed by subsets of H2 host proteins potentially outcompeted by HIV proteins. A large subset of these motifs is involved in cleavage, nuclear localization, phosphorylation, and transcription factor binding events. Many such motifs are clustered on an HIV sequence in the form of hotspots. The sequential positions of these hotspots are consistent with the curated literature on phenotype altering residue mutations, as well as with existing binding site data. The hotspot map produced in this study is the first global portrayal of HIV motifs involved in altering the host protein network at highly connected hub nodes

Identification of hematein as a novel inhibitor of protein kinase CK2 from a natural product library

<p>Abstract</p> <p>Background</p> <p>Casein kinase 2 (CK2) is dysregulated in various human cancers and is a promising target for cancer therapy. To date, there is no small molecular CK2 inhibitor in clinical trial yet. With the aim to identify novel CK2 inhibitors, we screened a natural product library.</p> <p>Methods</p> <p>We adopted cell-based proliferation and CK2 kinase assays to screen CK2 inhibitors from a natural compound library. Dose-dependent response of CK2 inhibitors <it>in vitro </it>was determined by a radioisotope kinase assay. Western blot analysis was used to evaluate down stream Akt phosphorylation and apoptosis. Apoptosis was also evaluated by annexin-V/propidium iodide (PI) labeling method using flow cytometry. Inhibition effects of CK2 inhibitors on the growth of cancer and normal cells were evaluated by cell proliferation and viability assays.</p> <p>Results</p> <p>Hematein was identified as a novel CK2 inhibitor that is highly selective among a panel of kinases. It appears to be an ATP non-competitive and partially reversible CK2 inhibitor with an IC₅₀value of 0.55 μM. In addition, hematein inhibited cancer cell growth partially through down-regulation of Akt phosphorylation and induced apoptosis in these cells. Furthermore, hematein exerted stronger inhibition effects on the growth of cancer cells than in normal cells.</p> <p>Conclusion</p> <p>In this study, we showed that hematein is a novel selective and cell permeable small molecule CK2 inhibitor. Hematein showed stronger growth inhibition effects to cancer cells when compared to normal cells. This compound may represent a promising class of CK2 inhibitors.</p