Insights into Analogy Completion from the Biomedical Domain

Analogy completion has been a popular task in recent years for evaluating the semantic properties of word embeddings, but the standard methodology makes a number of assumptions about analogies that do not always hold, either in recent benchmark datasets or when expanding into other domains. Through an analysis of analogies in the biomedical domain, we identify three assumptions: that of a Single Answer for any given analogy, that the pairs involved describe the Same Relationship, and that each pair is Informative with respect to the other. We propose modifying the standard methodology to relax these assumptions by allowing for multiple correct answers, reporting MAP and MRR in addition to accuracy, and using multiple example pairs. We further present BMASS, a novel dataset for evaluating linguistic regularities in biomedical embeddings, and demonstrate that the relationships described in the dataset pose significant semantic challenges to current word embedding methods.Comment: Accepted to BioNLP 2017. (10 pages

Selective Demonstrations for Cross-domain Text-to-SQL

Large language models (LLMs) with in-context learning have demonstrated impressive generalization capabilities in the cross-domain text-to-SQL task, without the use of in-domain annotations. However, incorporating in-domain demonstration examples has been found to greatly enhance LLMs' performance. In this paper, we delve into the key factors within in-domain examples that contribute to the improvement and explore whether we can harness these benefits without relying on in-domain annotations. Based on our findings, we propose a demonstration selection framework ODIS which utilizes both out-of-domain examples and synthetically generated in-domain examples to construct demonstrations. By retrieving demonstrations from hybrid sources, ODIS leverages the advantages of both, showcasing its effectiveness compared to baseline methods that rely on a single data source. Furthermore, ODIS outperforms state-of-the-art approaches on two cross-domain text-to-SQL datasets, with improvements of 1.1 and 11.8 points in execution accuracy, respectively.Comment: EMNLP 202

How to Prompt LLMs for Text-to-SQL: A Study in Zero-shot, Single-domain, and Cross-domain Settings

Large language models (LLMs) with in-context learning have demonstrated remarkable capability in the text-to-SQL task. Previous research has prompted LLMs with various demonstration-retrieval strategies and intermediate reasoning steps to enhance the performance of LLMs. However, those works often employ varied strategies when constructing the prompt text for text-to-SQL inputs, such as databases and demonstration examples. This leads to a lack of comparability in both the prompt constructions and their primary contributions. Furthermore, selecting an effective prompt construction has emerged as a persistent problem for future research. To address this limitation, we comprehensively investigate the impact of prompt constructions across various settings and provide insights for future work

Writing habits and telltale neighbors: analyzing clinical concept usage patterns with sublanguage embeddings

Natural language processing techniques are being applied to increasingly diverse types of electronic health records, and can benefit from in-depth understanding of the distinguishing characteristics of medical document types. We present a method for characterizing the usage patterns of clinical concepts among different document types, in order to capture semantic differences beyond the lexical level. By training concept embeddings on clinical documents of different types and measuring the differences in their nearest neighborhood structures, we are able to measure divergences in concept usage while correcting for noise in embedding learning. Experiments on the MIMIC-III corpus demonstrate that our approach captures clinically-relevant differences in concept usage and provides an intuitive way to explore semantic characteristics of clinical document collections.Comment: LOUHI 2019 (co-located with EMNLP

Characterizing the impact of geometric properties of word embeddings on task performance

Analysis of word embedding properties to inform their use in downstream NLP tasks has largely been studied by assessing nearest neighbors. However, geometric properties of the continuous feature space contribute directly to the use of embedding features in downstream models, and are largely unexplored. We consider four properties of word embedding geometry, namely: position relative to the origin, distribution of features in the vector space, global pairwise distances, and local pairwise distances. We define a sequence of transformations to generate new embeddings that expose subsets of these properties to downstream models and evaluate change in task performance to understand the contribution of each property to NLP models. We transform publicly available pretrained embeddings from three popular toolkits (word2vec, GloVe, and FastText) and evaluate on a variety of intrinsic tasks, which model linguistic information in the vector space, and extrinsic tasks, which use vectors as input to machine learning models. We find that intrinsic evaluations are highly sensitive to absolute position, while extrinsic tasks rely primarily on local similarity. Our findings suggest that future embedding models and post-processing techniques should focus primarily on similarity to nearby points in vector space.Comment: Appearing in the Third Workshop on Evaluating Vector Space Representations for NLP (RepEval 2019). 7 pages + reference

Automated Coding of Under-Studied Medical Concept Domains: Linking Physical Activity Reports to the International Classification of Functioning, Disability, and Health

Linking clinical narratives to standardized vocabularies and coding systems is a key component of unlocking the information in medical text for analysis. However, many domains of medical concepts lack well-developed terminologies that can support effective coding of medical text. We present a framework for developing natural language processing (NLP) technologies for automated coding of under-studied types of medical information, and demonstrate its applicability via a case study on physical mobility function. Mobility is a component of many health measures, from post-acute care and surgical outcomes to chronic frailty and disability, and is coded in the International Classification of Functioning, Disability, and Health (ICF). However, mobility and other types of functional activity remain under-studied in medical informatics, and neither the ICF nor commonly-used medical terminologies capture functional status terminology in practice. We investigated two data-driven paradigms, classification and candidate selection, to link narrative observations of mobility to standardized ICF codes, using a dataset of clinical narratives from physical therapy encounters. Recent advances in language modeling and word embedding were used as features for established machine learning models and a novel deep learning approach, achieving a macro F-1 score of 84% on linking mobility activity reports to ICF codes. Both classification and candidate selection approaches present distinct strengths for automated coding in under-studied domains, and we highlight that the combination of (i) a small annotated data set; (ii) expert definitions of codes of interest; and (iii) a representative text corpus is sufficient to produce high-performing automated coding systems. This study has implications for the ongoing growth of NLP tools for a variety of specialized applications in clinical care and research.Comment: Updated final version, published in Frontiers in Digital Health, https://doi.org/10.3389/fdgth.2021.620828. 34 pages (23 text + 11 references); 9 figures, 2 table

End-to-End real time tracking of children's reading with pointer network

In this work, we explore how a real time reading tracker can be built efficiently for children's voices. While previously proposed reading trackers focused on ASR-based cascaded approaches, we propose a fully end-to-end model making it less prone to lags in voice tracking. We employ a pointer network that directly learns to predict positions in the ground truth text conditioned on the streaming speech. To train this pointer network, we generate ground truth training signals by using forced alignment between the read speech and the text being read on the training set. Exploring different forced alignment models, we find a neural attention based model is at least as close in alignment accuracy to the Montreal Forced Aligner, but surprisingly is a better training signal for the pointer network. Our results are reported on one adult speech data (TIMIT) and two children's speech datasets (CMU Kids and Reading Races). Our best model can accurately track adult speech with 87.8% accuracy and the much harder and disfluent children's speech with 77.1% accuracy on CMU Kids data and a 65.3% accuracy on the Reading Races dataset.Comment: 5 pages, 3 figure