Single polymer gating of channels under a solvent gradient

We study the effect of a gradient of solvent quality on the coil-globule transition for a polymer in a narrow pore. A simple self-attracting self-avoiding walk model of a polymer in solution shows that the variation in the strength of interaction across the pore leads the system to go from one regime (good solvent) to the other (poor solvent) across the channel. This may be thought analogous to thermophoresis, where the polymer goes from the hot region to the cold region under the temperature gradient. The behavior of short chains is studied using exact enumeration whilst the behavior of long chains is studied using transfer matrix techniques. The distribution of the monomer density across the layer suggests that a gate-like effect can be created, with potential applications as a sensor.Comment: 5 Pages, 7 Figures, Accepted in Phys. Rev. E (2013

Force induced melting of the constrained DNA

We develop a simple model to study the effects of an applied force on the melting of a double stranded DNA (dsDNA). Using this model, we could study the stretching, unzipping, rupture and slippage like transition in a dsDNA. We show that in absence of an applied force, the melting temperature and the melting profile of dsDNA strongly depend on the constrained imposed on the ends of dsDNA. The nature of the phase boundary which separates the zipped and the open state for the shearing like transition is remarkably different than the DNA unzippingComment: 8 pages, 10 figure