Genetic Affinities of the Central Indian Tribal Populations

Background: The central Indian state Madhya Pradesh is often called as ‘heart of India ’ and has always been an important region functioning as a trinexus belt for three major language families (Indo-European, Dravidian and Austroasiatic). There are less detailed genetic studies on the populations inhabited in this region. Therefore, this study is an attempt for extensive characterization of genetic ancestries of three tribal populations, namely; Bharia, Bhil and Sahariya, inhabiting this region using haploid and diploid DNA markers. Methodology/Principal Findings: Mitochondrial DNA analysis showed high diversity, including some of the older sublineages of M haplogroup and prominent R lineages in all the three tribes. Y-chromosomal biallelic markers revealed high frequency of Austroasiatic-specific M95-O2a haplogroup in Bharia and Sahariya, M82-H1a in Bhil and M17-R1a in Bhil and Sahariya. The results obtained by haploid as well as diploid genetic markers revealed strong genetic affinity of Bharia (a Dravidian speaking tribe) with the Austroasiatic (Munda) group. The gene flow from Austroasiatic group is further confirmed by their Y-STRs haplotype sharing analysis, where we determined their founder haplotype from the North Munda speaking tribe, while, autosomal analysis was largely in concordant with the haploid DNA results. Conclusions/Significance: Bhil exhibited largely Indo-European specific ancestry, while Sahariya and Bharia showed admixed genetic package of Indo-European and Austroasiatic populations. Hence, in a landscape like India, linguistic labe

Inconsistencies in the red blood cell membrane proteome analysis: generation of a database for research and diagnostic applications.

Based on recent results, the determination of the easily accessible red blood cell (RBC) membrane proteins may provide new diagnostic possibilities for assessing mutations, polymorphisms or regulatory alterations in diseases. However, the analysis of the current mass spectrometry-based proteomics datasets and other major databases indicates inconsistencies-the results show large scattering and only a limited overlap for the identified RBC membrane proteins. Here, we applied membrane-specific proteomics studies in human RBC, compared these results with the data in the literature, and generated a comprehensive and expandable database using all available data sources. The integrated web database now refers to proteomic, genetic and medical databases as well, and contains an unexpected large number of validated membrane proteins previously thought to be specific for other tissues and/or related to major human diseases. Since the determination of protein expression in RBC provides a method to indicate pathological alterations, our database should facilitate the development of RBC membrane biomarker platforms and provide a unique resource to aid related further research and diagnostics

Directing Monolayer Tungsten Disulfide Photoluminescence using a Bent Plasmonic Nanowire on a Mirror Cavity

Designing directional optical antennas without compromising the field enhancement requires specially designed optical cavities. Herein, we report on the experimental observations of directional photoluminescence emission from a monolayer Tungsten Disulfide using a bent-plasmonic nanowire on a mirror cavity. The geometry provides field enhancement and directivity to photoluminescence by sandwiching the monolayer between an extended cavity formed by dropcasting bent silver nanowire and a gold mirror. We image the photoluminescence emission wavevectors by using the Fourier plane imaging technique. The cavity out-couples the emission in a narrow range of wavevectors with a radial and azimuthal spreading of only 11.0{\deg} and 25.1{\deg}, respectively. Furthermore, we performed three dimensional finite difference time domain based numerical calculations to corroborate and understand the experimental results. We envisage that the results presented here will be readily harnessed for on-chip coupling applications and in designing inelastic optical antennas

Directional emission from WS2 monolayer coupled to plasmonic Nanowire-on-Mirror Cavity

Influencing spectral and directional features of exciton emission characteristics from 2D transition metal dichalcogenides by coupling it to plasmonic nano-cavities has emerged as an important prospect in nanophotonics of 2D materials. In this paper we experimentally study the directional photoluminescence emission from Tungsten disulfide (WS2) monolayer sandwiched between a single-crystalline plasmonic silver nanowire (AgNW) waveguide and a gold (Au) mirror, thus forming an AgNW-WS2-Au cavity. By employing polarization-resolved Fourier plane optical microscopy, we quantify the directional emission characteristics from the distal end of the AgNW-WS2-Au cavity. Given that our geometry simultaneously facilitates local field enhancement and waveguiding capability, we envisage its utility in 2D material-based, on-chip nanophotonic signal processing, including nonlinear and quantum optical regimes.Comment: To appear in Advanced Photonics Research (2021

Mirror-Coupled Microsphere can narrow the Angular distribution of Photoluminescence from WS2 Monolayers

Engineering optical emission from two dimensional, transition metal dichalcogenides (TMDs) materials such as Tungsten disulphide (WS2) has implications in creating and understanding nanophotonic sources. One of the challenges in controlling the optical emission from 2D materials is to achieve narrow angular spread using a simple photonic geometry. In this paper, we study how the photoluminescence of a monolayer WS2 can be controlled when coupled to film coupled microsphere dielectric antenna. Specifically, by employing Fourier plane microscopy and spectroscopic techniques, we quantify the wavevector distribution in the momentum space. As a result, we show beaming of the WS2 photoluminescence with angular divergence of {\theta}1/2 = 4.6{\deg}. Furthermore, the experimental measurements have been supported by three-dimensional numerical simulations. We envisage that the discussed results can be generalized to a variety of nanophotonic 2D materials, and can be harnessed in nonlinear and quantum technology

In situ origin of deep rooting lineages of mitochondrial Macrohaplogroup 'M' in India

BACKGROUND: Macrohaplogroups 'M' and 'N' have evolved almost in parallel from a founder haplogroup L3. Macrohaplogroup N in India has already been defined in previous studies and recently the macrohaplogroup M among the Indian populations has been characterized. In this study, we attempted to reconstruct and re-evaluate the phylogeny of Macrohaplogroup M, which harbors more than 60% of the Indian mtDNA lineage, and to shed light on the origin of its deep rooting haplogroups. RESULTS: Using 11 whole mtDNA and 2231 partial coding sequence of Indian M lineage selected from 8670 HVS1 sequences across India, we have reconstructed the tree including Andamanese-specific lineage M31 and calculated the time depth of all the nodes. We defined one novel haplogroup M41, and revised the classification of haplogroups M3, M18, and M31. CONCLUSION: Our result indicates that the Indian mtDNA pool consists of several deep rooting lineages of macrohaplogroup 'M' suggesting in-situ origin of these haplogroups in South Asia, most likely in the India. These deep rooting lineages are not language specific and spread over all the language groups in India. Moreover, our reanalysis of the Andamanese-specific lineage M31 suggests population specific two clear-cut subclades (M31a1 and M31a2). Onge and Jarwa share M31a1 branch while M31a2 clade is present in only Great Andamanese individuals. Overall our study supported the one wave, rapid dispersal theory of modern humans along the Asian coast