Volcanic CO2 Abundance of Kilauea Plume Retrieved by Meand of AVIRIS Data

Absorbing the electromagnetic radiation in several regions of the solar spectrum, CO2 plays an important role in the Earth radiation budget since it produces the greenhouse effect. Many natural processes in the Earth s system add and remove carbon dioxide. Overall, measurements of atmospheric carbon dioxide at different sites around the world show an increased carbon dioxide concentration in the atmosphere. At Mauna Loa Observatory (Hawaii) the measured carbon dioxide increased from 315 to 365 ppm, in the period 1958 2000 [Keeling et al., 2001]. While at the large scale, the relationship between CO2 increase and global warming is established [IPCC, 1996], at the local scale, many studies are still needed to understand regional and local sources of carbon dioxide, such as volcanoes. The volcanic areas are particularly rich in carbon dioxide; this is due to magma degassing in the summit craters region of active volcanoes, and to the presence of fractures and active faults [Giammanco et al., 1998]. Several studies estimate a global flux of volcanic CO2 (34+/-24)10(exp 6) tons/day from effusive volcanic emissions, such as the tropospheric volcanic plume (Table 1) [McClelland et al., 1989]. Plumes are a turbulent mixture of gases, solid particles and liquid droplets, emitted continuously at high temperature from summit craters, fumarolic fields or during eruptive episodes. Inside the plume, water vapour represents 70 90% of the volcanic gases. The main gaseous components are CO2, SO2, HCl, H2, H2S, HF, CO, N2 and CH4. Other plume components are volcanic ash, aqueous and acid droplets and solid sulphur-derived particles [Sparks et al., 1997]. Volcanic gases and aerosols are evidences of volcanic activity [Spinetti et al., 2003] and they have important climatic and environmental effects [Fiocco et al., 1994]. For example, Etna volcano is one of the world s major volcanic gas sources [Allard et al., 1991]. New studies on volcanic gaseous emissions have pointed out that a variation of the gas ratio CO2/SO2 is related to eruptive episodes [Caltabiano et al., 1994]. However, measurements and monitoring of volcanic carbon dioxide are difficult and often hazardous, due to the high background presence of atmospheric CO2 and the inaccessibility of volcanic sites. Hyperspectral remote sensing is a suitable technique to overcome the difficulties of ground measurement. It permits a rapid, comprehensive view of volcanic plumes and their evolution over time, detection of all gases with absorption molecular lines within the sensor s multispectral range and, in general, measurement of all the volatile components evolving from craters. The molecular and particle plume components scatter and absorb incident solar radiation. The integral of the radiation difference composes the signal measured by the remote spectrometer. The inversion technique consists of retrieving the plume component concentrations, hence decomposing the signal into the different contributions. The accuracy of remote sensing techniques depends primarily on the sensor capability and sensitivity

De la longévité coopérative: une étude de la dynamique des coopératives agricoles françaises

Le paysage coopératif agricole est en forte transformation depuis de nombreuses années, entre disparitions, fusions et consolidations. Différents travaux théoriques ont tenté de proposer une explication des particularités coopératives en termes d\u27efficacité et de capacité à survivre. Nous en présentons ici les grandes propositions de recherche. Notre travail est centré sur une contribution empirique. A ce titre, la mobilisation de méthodes simples d\u27analyse de survie permet de mettre en évidence une dynamique temporelle favorable aux coopératives vis-à-vis des autres entreprises avec lesquelles elles sont en concurrence. Cette dynamique s\u27accompagne de trajectoires sectorielles particulières et de dynamiques spécifiques suivant les régions. En conclusion, nous proposons quelques pistes d\u27explication de ces dynamiques

GIVE: portable genome browsers for personal websites.

Growing popularity and diversity of genomic data demand portable and versatile genome browsers. Here, we present an open source programming library called GIVE that facilitates the creation of personalized genome browsers without requiring a system administrator. By inserting HTML tags, one can add to a personal webpage interactive visualization of multiple types of genomics data, including genome annotation, "linear" quantitative data, and genome interaction data. GIVE includes a graphical interface called HUG (HTML Universal Generator) that automatically generates HTML code for displaying user chosen data, which can be copy-pasted into user's personal website or saved and shared with collaborators. GIVE is available at: https://www.givengine.org/

Seahawk: moving beyond HTML in Web-based bioinformatics analysis

<p>Abstract</p> <p>Background</p> <p>Traditional HTML interfaces for input to and output from Bioinformatics analysis on the Web are highly variable in style, content and data formats. Combining multiple analyses can therfore be an onerous task for biologists. Semantic Web Services allow automated discovery of conceptual links between remote data analysis servers. A shared data ontology and service discovery/execution framework is particularly attractive in Bioinformatics, where data and services are often both disparate and distributed. Instead of biologists copying, pasting and reformatting data between various Web sites, Semantic Web Service protocols such as MOBY-S hold out the promise of seamlessly integrating multi-step analysis.</p> <p>Results</p> <p>We have developed a program (Seahawk) that allows biologists to intuitively and seamlessly chain together Web Services using a data-centric, rather than the customary service-centric approach. The approach is illustrated with a ferredoxin mutation analysis. Seahawk concentrates on lowering entry barriers for biologists: no prior knowledge of the data ontology, or relevant services is required. In stark contrast to other MOBY-S clients, in Seahawk users simply load Web pages and text files they already work with. Underlying the familiar Web-browser interaction is an XML data engine based on extensible XSLT style sheets, regular expressions, and XPath statements which import existing user data into the MOBY-S format.</p> <p>Conclusion</p> <p>As an easily accessible applet, Seahawk moves beyond standard Web browser interaction, providing mechanisms for the biologist to concentrate on the analytical task rather than on the technical details of data formats and Web forms. As the MOBY-S protocol nears a 1.0 specification, we expect more biologists to adopt these new semantic-oriented ways of doing Web-based analysis, which empower them to do more complicated, <it>ad hoc </it>analysis workflow creation without the assistance of a programmer.</p

Modélisation de l'entretien du paysage par des herbivores en moyenne montagne : une approche multi-agents

L'abandon de l'utilisation des ressources herbagères par l'activité pastorale entraîne un appauvrissement de la diversité écologique et spécifique. A terme, cette évolution se traduit par le déplacement des activités humaines hors de ces zones et à un déséquilibre au niveau du territoire national. Un programme de recherche pluridisciplinaire, dans le cadre d'un Groupement d'intérêt Scientifique, a été mis en place dès 1994 pour élaborer de nouveaux modes de gestion qui concilient production agricole et entretien de l'espace en condition de sous chargement (peu d'animaux par unité de surface). Cet article s'inscrit dans une démarche d'acquisition de méthodes afin d'expérimenter des techniques de gestion de pâturage mixte bovins et chevaux selon une hypothèse de complémentarité entre ces deux espèces. La partie informatique présentée vise à simuler les dynamiques animales, végétales et paysagères futures et, à terme, proposer des protocoles de gestion aptes à répondre à ces nouvelles demandes. L'objectif de la modélisation que nous présentons est de simuler le fonctionnement de l'estive, afin de comprendre l'interaction entre l'évolution de la végétation, les déplacements et les actions des animaux en pâture. Un des modes de simulation utilise un système multi-agents. Le modèle conceptuel de la simulation est en cours de validation, il a été formalisé avec la notation graphique du langage de modélisation unifié (UML) et la version actuelle du logiciel est implémentée avec le langage de programmation Java. Pour suivre et enregistrer les localisations des animaux sur le terrain, ceux-ci sont équipés d'un récepteur satellite GPS (Global Positioning System). L'activité de pâturage des animaux est enregistrée par des colliers Ethosys. / The surrender of herbaceous resources by the grazing activity results in an impoverishment of both ecological and specific diversity. On the long term, this trend imposes the localization of human activities far from these zones and a national imbalance. A multidisciplinary research program was set up in 1994 with the aim of elaborating new ways of management, which would contribute to maintain both the productivity and the opened landscapes within the condition of low grazing pressure. This paper exposes the methods we elaborated in order to test several management techniques of grasslands by mean of cattle and horses within the hypothesis of complementarity between these two species. The computer science part of this paper presents the results of simulations of future dynamic behaviors of the animals, vegetation and landscape, in order to propound some management protocols. The simulator is based on a multi-agent system. The conceptual model, formalized with Unified Modeling Language graphical notation is actually in validation phase and the implementation of the software was done in the Java programming language. The following of the animals in the field was done by means of GPS equipments and the animal activity was recorded by Ethosys equipments

Accuracy Assessment of Global Internal-Tide Models Using Satellite Altimetry

Altimeter measurements are corrected for several geophysical parameters in order to access ocean signals of interest, like mesoscale or sub-mesoscale variability. The ocean tide is one of the most critical corrections due to the amplitude of the tidal elevations and to the aliasing phenomena of high-frequency signals into the lower-frequency band, but the internal-tide signatures at the ocean surface are not yet corrected globally. Internal tides can have a signature of several centimeters at the surface with wavelengths of about 50–250 km for the first mode and even smaller scales for higher-order modes. The goals of the upcoming Surface Water Ocean Topography (SWOT) mission and other high-resolution ocean measurements make the correction of these small-scale signals a challenge, as the correction of all tidal variability becomes mandatory to access accurate measurements of other oceanic signals. In this context, several scientific teams are working on the development of new internal-tide models, taking advantage of the very long altimeter time series now available, which represent an unprecedented and valuable global ocean database. The internal-tide models presented here focus on the coherent internal-tide signal and they are of three types: empirical models based upon analysis of existing altimeter missions, an assimilative model and a three-dimensional hydrodynamic model. A detailed comparison and validation of these internal-tide models is proposed using existing satellite altimeter databases. The analysis focuses on the four main tidal constituents: M2, K1, O1 and S2. The validation process is based on a statistical analysis of multi-mission altimetry including Jason-2 and Cryosphere Satellite-2 data. The results show a significant altimeter variance reduction when using internal-tide corrections in all ocean regions where internal tides are generating or propagating. A complementary spectral analysis also gives some estimation of the performance of each model as a function of wavelength and some insight into the residual non-stationary part of internal tides in the different regions of interest. This work led to the implementation of a new internal-tide correction (ZARON\u27one) in the next geophysical data records version-F (GDR-F) standards

Human pluripotent stem cell-derived neurons are functionally mature in vitro and integrate into the mouse striatum following transplantation

Human Pluripotent Stem Cells (hPSCs) are a powerful tool for modelling human development. In recent years, hPSCSs have become central in cell-based therapies for neurodegenerative diseases given their potential to replace affected neurons. However, directing hPSCs into specific neuronal types is complex and requires an accurate protocol that mimics endogenous neuronal development. Here we describe step-by-step a novel and fast feeder-free neuronal differentiation protocol to direct hPSCs onto mature forebrain neurons in 37 days in vitro (DIV). The protocol is grounded on a combination of specific morphogens, trophic and growth factors, ions, neurotransmitters and extracellular matrix elements. An induced hPSC line (Ctr-Q33) and an embryonic hPSC line (GEN-Q18) were used to reinforce the potential of the protocol. Neuronal activity was analysed by single-cell calcium imaging. At 8 DIV, we obtained a homogeneous population of hPSCs-derived neuroectodermal progenitors which self-arranged in bi-dimensional neural tube-like structures. At 16 DIV, we generated hPSC-derived neural progenitors (NPCs) with mostly subpallial identity along with a subpopulation of pallial NPCs. Terminal in vitro neuronal differentiation was confirmed by the expression of microtubule associated protein 2b (Map2b) by almost 100% of hPSC-derived neurons and the expression of specific-striatal neuronal markers including GABA, CTIP2 and DARPP-32. HPSC-derived neurons showed mature and functional phenotypes as they expressed synaptic markers, voltage-gated ion channels and neurotransmitter receptors. Neurons displayed diverse spontaneous activity patterns that were classified into three major groups, namely 'high', 'intermediate' and 'low' firing neurons. Finally, transplantation experiments in vivo showed that highly relevant, committed NPCs survived within mouse striatum for at least 3 months. NPCs embodied host environmental cues and differentiated into striatal medium size spiny neurons (MSNs), which successfully integrated into the endogenous circuitry without the appearance of any teratoma symptom. Altogether, present findings demonstrate the potential of this in vitro human neuronal differentiation protocol, which will bring new opportunities for the study of human neurodevelopment and neurodegeneration, and will open new avenues in cell-based therapies, cutting-edge pharmacological studies and toxicology

Study protocol for the evaluation of the health effects of superblocks in barcelona : The "salut als carrers" (health in the streets) project

Superblocks are currently being introduced in Barcelona to respond to the city's scarcity of green spaces and high levels of air pollution, traffic injuries, and sedentariness. The aim is to calm the streets by reducing the number of square meters dedicated to private vehicles and to reclaim part of this public space for people. Salut als Carrers (Health in the Streets) is a project to evaluate the potential environmental and health effects of the superblock model with an equity perspective in Barcelona. This study aims to explain the various interventions implemented in different neighborhoods in Barcelona and the methods that will be used to evaluate them in a quasi-experimental and health impact assessment (HIA) approaches. Given the complexity of the intervention evaluated, the project employs mixed methodologies. Quantitative methods include: (a) a pre-post health survey of 1200 people randomly selected from the municipal register asked about self-perceived health and quality of life, social support, mental health, mobility, physical activity, neighborhood characteristics, and housing; (b) pre-post environmental measurements, mainly of nitrogen dioxide (NO), particulate matter of less than 10 µm (PM), and particulate matter of less than 2.5 µm (PM) and black carbon; (c) pre-post environmental walkability measures using the Microscale Audit of Pedestrian Streetscapes (MAPS) tool; (d) use of public space and physical activity levels using the System for Observing Play and Recreation in Communities (SOPARC), a validated observation tool; (e) pre-post traffic injury measures with a comparison group; and (f) the comparison and integration of pre-post assessment with previous HIAs and the improvement of future HIAs. Qualitative studies will be performed to analyze residents' perception of these effects by using: (a) various focus groups according to different participant characteristics who are more or less likely to use the superblocks; and (b) a guerrilla ethnography, which is a method that combines ethnographic observation and semi-structured interviews. This study, which evaluates the impact of an ambitious urban-renewal program on health, will help to assess the effectiveness of public policy in terms of health and health inequalities