Wound healing across the animal kingdom: Crosstalk between the immune system and the extracellular matrix

© The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Arenas Gómez, Claudia M., Sabin, K. Z., & Echeverri, K. Wound healing across the animal kingdom: Crosstalk between the immune system and the extracellular matrix. Developmental Dynamics, (2020): 1-13, doi:10.1002/dvdy.178.Tissue regeneration is widespread in the animal kingdom. To date, key roles for different molecular and cellular programs in regeneration have been described, but the ultimate blueprint for this talent remains elusive. In animals capable of tissue regeneration, one of the most crucial stages is wound healing, whose main goal is to close the wound and prevent infection. In this stage, it is necessary to avoid scar formation to facilitate the activation of the immune system and remodeling of the extracellular matrix, key factors in promoting tissue regeneration. In this review, we will discuss the current state of knowledge regarding the role of the immune system and the interplay with the extracellular matrix to trigger a regenerative response.The research in the Echeverri lab is supported NIH NCID R01 to Karen Echeverri and start‐up funds from the MBL. Keith Z. Sabin has been supported by an NIH T32 GM113846 grant

Stratigraphy and sedimentology of distal-alluvial and lacustrine deposits of the western-central Ebro Basin (NE Iberia) reflecting the onset of the middle Miocene Climatic Optimum

Stratigraphic and sedimentological study of distal alluvial and lacustrine deposits in the Plana de la Negra-Sancho Abarca area (western-central Ebro Basin, NE Iberia) within the early and middle Miocene allows five main lithofacies to be characterized and mapped within two tectosedimentary units, construction of a sedimentary facies model and discussion on allogenic controls on sedimentation. In this area, the boundary between tectosedimentary units T5 and T6 appears to be conformable and is marked by the change from dominant clastics to carbonates. Correlation of the studied outcrops with nearby sections that already had magnetostratigraphic and biostratigraphic data allows the studied succession to be dated from C5Dr to C5Cn (Burdigalian-Langhian), placing the boundary T5/T6 at ca. 16.1-16.05Ma. Seven vertical facies sequences document deposition of distal alluvial clastics and palustrine and lacustrine carbonates. Sandstones and mudstones represent low-sinuosity channels and lateral and terminal splays by unconfined flows runnig across the alluvial plain, associated to the Pyrenean-derived Luna fluvial system. The carbonates contain charophytes, ostracods, bivalves and gastropods, indicating deposition in 2-4m deep lakes. Laminated carbonate facies record reworking of shore carbonates and the influx fine-siliciclastic sediment offshore. Abundant bioturbation and desiccation features indicate episodic submergence and subaerial exposure. Four main episodes of alluvial and associated palustrine/lacustrine facies belt shifts are identified. Alluvial deposition in the studied T5 unit is related to low lake level conditions, rather than to a Pyrenean uplift. The maximum extent of the freshwater carbonates occur at the base of unit T6. This is consistent with conditions of increasing humidity of the Middle Miocene Climatic Optimum

How to suppress undesired synchronization

It is delightful to observe the emergence of synchronization in the blinking of fireflies to attract partners and preys. Other charming examples of synchronization can also be found in a wide range of phenomena such as, e.g., neurons firing, lasers cascades, chemical reactions, and opinion formation. However, in many situations the formation of a coherent state is not pleasant and should be mitigated. For example, the onset of synchronization can be the root of epileptic seizures, traffic congestion in communication networks, and the collapse of constructions. Here we propose the use of contrarians to suppress undesired synchronization. We perform a comparative study of different strategies, either requiring local or total knowledge of the system, and show that the most efficient one solely requires local information. Our results also reveal that, even when the distribution of neighboring interactions is narrow, significant improvement in mitigation is observed when contrarians sit at the highly connected elements. The same qualitative results are obtained for artificially generated networks as well as two real ones, namely, the Routers of the Internet and a neuronal network

Enhance the Efficiency of Heuristic Algorithm for Maximizing Modularity Q

Modularity Q is an important function for identifying community structure in complex networks. In this paper, we prove that the modularity maximization problem is equivalent to a nonconvex quadratic programming problem. This result provide us a simple way to improve the efficiency of heuristic algorithms for maximizing modularity Q. Many numerical results demonstrate that it is very effective.Comment: 9 pages, 3 figure

An Explicit Bound for Dynamical Localisation in an Interacting Many-Body System

We characterise and study dynamical localisation of a finite interacting quantum many-body system. We present explicit bounds on the disorder strength required for the onset of localisation of the dynamics of arbitrary ensemble of sites of the XYZ spin-1/2 model. We obtain these results using a novel form of the fractional moment criterion, which we establish, together with a generalisation of the self-avoiding walk representation of the system Green's functions, called path-sums. These techniques are not specific to the XYZ model and hold in a much more general setting. We further present bounds for two observable quantities in the localised regime: the magnetisation of any sublattice of the system as well as the linear magnetic response function of the system. We confirm our results through numerical simulations.Comment: 35 pages; 5 figure

Leader honesty/humility and subordinate organizational citizenship behavior: a case of too-much-of-a-good-thing?

Purpose – On the basis of theories of social cognition and moral identity and the meta-theoretical principle of “too-much-of-a-good-thing,” the purpose of this study is to develop and test a model that explains when and why leader honesty/humility promotes subordinate organizational citizenship behavior directed at individuals (OCBI) as mediated through subordinate moral identity centrality. Design/methodology/approach – In this field study, with online surveys, multisource data were collected from 218 United States Air Force officers and their subordinates. Data were analyzed with MEDCURVE SPSS macro tools. Findings – A nonlinear indirect effect of leader honesty/humility on subordinate OCBI through subordinate moral identity centrality was found. This conditional indirect effect occurred through a curvilinear (inverted Ushape) relationship between leader honesty/humility and subordinate moral identity centrality and a positive linear relationship between subordinate moral identity centrality and OCBI. Research limitations/implications – Cross-sectional data were collected. Future research might replicate findings using experimental and longitudinal designs. Practical implications – Recruiting and selecting leaders who possess a moderate level of honesty/humility may serve as the first step in producing prosocial behavior during social interactions with subordinates. Originality/value – This study extends the literature on character and leadership by applying the too-muchof-a-good-thing principle to empirically test the complex nature of the relationship between

Size reduction of complex networks preserving modularity

The ubiquity of modular structure in real-world complex networks is being the focus of attention in many trials to understand the interplay between network topology and functionality. The best approaches to the identification of modular structure are based on the optimization of a quality function known as modularity. However this optimization is a hard task provided that the computational complexity of the problem is in the NP-hard class. Here we propose an exact method for reducing the size of weighted (directed and undirected) complex networks while maintaining invariant its modularity. This size reduction allows the heuristic algorithms that optimize modularity for a better exploration of the modularity landscape. We compare the modularity obtained in several real complex-networks by using the Extremal Optimization algorithm, before and after the size reduction, showing the improvement obtained. We speculate that the proposed analytical size reduction could be extended to an exact coarse graining of the network in the scope of real-space renormalization.Comment: 14 pages, 2 figure

Detecting modules in dense weighted networks with the Potts method

We address the problem of multiresolution module detection in dense weighted networks, where the modular structure is encoded in the weights rather than topology. We discuss a weighted version of the q-state Potts method, which was originally introduced by Reichardt and Bornholdt. This weighted method can be directly applied to dense networks. We discuss the dependence of the resolution of the method on its tuning parameter and network properties, using sparse and dense weighted networks with built-in modules as example cases. Finally, we apply the method to data on stock price correlations, and show that the resulting modules correspond well to known structural properties of this correlation network.Comment: 14 pages, 6 figures. v2: 1 figure added, 1 reference added, minor changes. v3: 3 references added, minor change

Self-organized criticality and synchronization in a lattice model of integrate-and-fire oscillators

We introduce two coupled map lattice models with nonconservative interactions and a continuous nonlinear driving. Depending on both the degree of conservation and the convexity of the driving we find different behaviors, ranging from self-organized criticality, in the sense that the distribution of events (avalanches) obeys a power law, to a macroscopic synchronization of the population of oscillators, with avalanches of the size of the system.Comment: 4 pages, Revtex 3.0, 3 PostScript figures available upon request to [email protected]