Prioritizing conservation areas to mitigate connectivity loss and local extinction risk of a small carnivore (Leopardus guttulus) in South America

Effective conservation management depends on the maintenance of key areas that allow population connectivity across the landscape. However, the lack of knowledge of how habitat conversion affects species movement hinders the identification of these areas. Here, we analyzed the impact of habitat fragmentation on landscape connectivity for Leopardus guttulus, a small Neotropical felid threatened by the high habitat fragmentation across the Atlantic Forest, and mapped and ranked the most important core areas and corridors for conservation actions. We also estimated genetic diversity indices and predicted the viability of the current core areas in the future. Our analyses suggest that L. guttulus populations are fragmented, and connectivity links between populations are few and weak. We predict that due to their size, estimated density and low connectivity, some current core areas may not maintain viable populations in the long-term. Also, ongoing land-use changes may further isolate remaining populations, leading to progressive reductions in the populations they support. In this study, we spatially prioritize the most critical areas for L. guttulus conservation and highlighted the urge that exists in the adoption of management measures for its conservation

The role of the environment in the spatial dynamics of an extensive hybrid zone between two neotropical cats

Identifying factors that create and maintain a hybrid zone is of great interest to ecology, evolution and, more recently, conservation biology. Here, we investigated the role of environmental features in shaping the spatial dynamics of a hybrid zone between the southern tigrina, Leopardus guttulus, and Geoffroy's cat, L. geoffroyi, testing for exogenous selection as the main force acting on its maintenance. These Neotropical felid species are mainly allopatric, with a restricted area of sympatry in the ecotone between the Atlantic Forest and Pampa biomes. As both biomes have experienced high rates of anthropogenic habitat alteration, we also analysed the influence of habitat conversion on the hybrid zone structure. To do this, we used 13 microsatellite loci to identify potential hybrids and generated ecological niche models for them and their parental species. We compared the influence of variables on parental species and hybrid occurrence and calculated the amount of niche overlap among them. Parental species showed different habitat requirements and predicted co-occurrence was restricted to the forest-grassland mosaic of the ecotone. However, hybrids were found beyond this area, mainly in the range of L. geoffroyi. Hybrids demonstrated higher tolerance to habitat alteration than parental types, with a probability of occurrence that was positively related with mosaics of cropland areas and remnants of natural vegetation. These results indicate that exogenous selection alone does not drive the dynamics of the hybrid zone, and that habitat conversion influences its structure, potentially favouring hybrids over parental species.Fil: Sartor, Caroline Charão. Universidade Federal do Rio Grande do Sul; BrasilFil: Cushman, Samuel Alan. United States Department of Agriculture; Estados UnidosFil: Wan, Ho Yi. Humboldt State University; Estados UnidosFil: Kretschmer, Rafael. Universidade Federal do Rio Grande do Sul; BrasilFil: Pereira, Javier Adolfo. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; ArgentinaFil: Bou, Nadia. Ministerio de Educacion y Cultura.; UruguayFil: Cosse, Mariana. Ministerio de Educacion y Cultura.; UruguayFil: González, Susana. Ministerio de Educacion y Cultura.; UruguayFil: Eizirik, Eduardo. Pontificia Universidade Católica do Rio Grande do Sul; BrasilFil: de Freitas, Thales Renato O.. Universidade Federal do Rio Grande do Sul; BrasilFil: Campos Trigo, Tatiane. Universidade Federal do Rio Grande do Sul; Brasi

Catálogo Taxonômico da Fauna do Brasil: setting the baseline knowledge on the animal diversity in Brazil

The limited temporal completeness and taxonomic accuracy of species lists, made available in a traditional manner in scientific publications, has always represented a problem. These lists are invariably limited to a few taxonomic groups and do not represent up-to-date knowledge of all species and classifications. In this context, the Brazilian megadiverse fauna is no exception, and the Catálogo Taxonômico da Fauna do Brasil (CTFB) (http://fauna.jbrj.gov.br/), made public in 2015, represents a database on biodiversity anchored on a list of valid and expertly recognized scientific names of animals in Brazil. The CTFB is updated in near real time by a team of more than 800 specialists. By January 1, 2024, the CTFB compiled 133,691 nominal species, with 125,138 that were considered valid. Most of the valid species were arthropods (82.3%, with more than 102,000 species) and chordates (7.69%, with over 11,000 species). These taxa were followed by a cluster composed of Mollusca (3,567 species), Platyhelminthes (2,292 species), Annelida (1,833 species), and Nematoda (1,447 species). All remaining groups had less than 1,000 species reported in Brazil, with Cnidaria (831 species), Porifera (628 species), Rotifera (606 species), and Bryozoa (520 species) representing those with more than 500 species. Analysis of the CTFB database can facilitate and direct efforts towards the discovery of new species in Brazil, but it is also fundamental in providing the best available list of valid nominal species to users, including those in science, health, conservation efforts, and any initiative involving animals. The importance of the CTFB is evidenced by the elevated number of citations in the scientific literature in diverse areas of biology, law, anthropology, education, forensic science, and veterinary science, among others

Skull shape and size variation within and between mendocinus and torquatus groups in the genus Ctenomys (Rodentia: Ctenomyidae) in chromosomal polymorphism context

Abstract We tested the association between chromosomal polymorphism and skull shape and size variation in two groups of the subterranean rodent Ctenomys. The hypothesis is based on the premise that chromosomal rearrangements in small populations, as it occurs in Ctenomys, produce reproductive isolation and allow the independent diversification of populations. The mendocinus group has species with low chromosomal diploid number variation (2n=46-48), while species from the torquatus group have a higher karyotype variation (2n=42-70). We analyzed the shape and size variation of skull and mandible by a geometric morphometric approach, with univariate and multivariate statistical analysis in 12 species from mendocinus and torquatus groups of the genus Ctenomys. We used 763 adult skulls in dorsal, ventral, and lateral views, and 515 mandibles in lateral view and 93 landmarks in four views. Although we expected more phenotypic variation in the torquatus than the mendocinus group, our results rejected the hypothesis of an association between chromosomal polymorphism and skull shape and size variation. Moreover, the torquatus group did not show more variation than mendocinus. Habitat heterogeneity associated to biomechanical constraints and other factors like geography, phylogeny, and demography, may affect skull morphological evolution in Ctenomys

Skull shape and size variation within and between mendocinus and torquatus groups in the genus Ctenomys (Rodentia: Ctenomyidae) in chromosomal polymorphism context

<div><p>Abstract We tested the association between chromosomal polymorphism and skull shape and size variation in two groups of the subterranean rodent Ctenomys. The hypothesis is based on the premise that chromosomal rearrangements in small populations, as it occurs in Ctenomys, produce reproductive isolation and allow the independent diversification of populations. The mendocinus group has species with low chromosomal diploid number variation (2n=46-48), while species from the torquatus group have a higher karyotype variation (2n=42-70). We analyzed the shape and size variation of skull and mandible by a geometric morphometric approach, with univariate and multivariate statistical analysis in 12 species from mendocinus and torquatus groups of the genus Ctenomys. We used 763 adult skulls in dorsal, ventral, and lateral views, and 515 mandibles in lateral view and 93 landmarks in four views. Although we expected more phenotypic variation in the torquatus than the mendocinus group, our results rejected the hypothesis of an association between chromosomal polymorphism and skull shape and size variation. Moreover, the torquatus group did not show more variation than mendocinus. Habitat heterogeneity associated to biomechanical constraints and other factors like geography, phylogeny, and demography, may affect skull morphological evolution in Ctenomys.</p></div

Data from: The ecology of a continental evolutionary radiation: Is the radiation of sigmodontine rodents adaptive?

Evolutionary radiations on continents are less well-understood and appreciated than those occurring on islands. The extent of ecological influence on species divergence can be evaluated to determine whether a radiation was ultimately the outcome of divergent natural selection or else arose mainly by nonecological divergence. Here, we used phylogenetic comparative methods to test distinct hypotheses corresponding to adaptive and nonadaptive evolutionary scenarios for the morphological evolution of sigmodontine rodents. Results showed that ecological variables (diet and life-mode) explain little of the shape and size variation of sigmodontine skulls and mandibles. A Brownian model with varying rates for insectivory versus all other diets was the most likely evolutionary model. The insectivorous sigmodontines have a faster rate of morphological evolution than mice feeding on other diets, possibly due to stronger selection for features that aid insectivory. We also demonstrate that rapid early-lineage diversification is not accompanied by high morphological divergence among subclades, contrasting with island results. The geographic size of continents permits spatial segregation to a greater extent than on islands, allowing for allopatric distributions and escape from interspecific competition. We suggest that continental radiations of rodents are likely to produce a pattern of high species diversification coupled with a low degree of phenotypic specialization

Genetic variation of the bronze locus (MC1R) in turkeys from Southern Brazil

Domestic turkeys present several color phenotypes controlled by at least five genetic loci, but only one of these has been identified precisely: the bronze locus, which turned out to be the melanocortin-1 receptor (MC1R) gene. MC1R variation is important for breeders interested in maintaining or developing different color varieties. In this study, we sequenced most of the MC1R gene from 16 White Holland (the main commercial turkey variety) and 19 pigmented turkeys from southern Brazil with two purposes. The first was to describe the MC1R diversity in White Holland turkeys, which may serve as reservoirs of genetic diversity at this locus. The second was to test whether the traditional color classification used by Brazilian breeders is related to previously known MC1R alleles. White Holland turkeys had four different haplotypes corresponding to the bronze (b + ) and black-winged bronze (b 1 ) alleles. Pigmented turkeys also had four haplotypes corresponding to the b + and b 1 alleles, but different haplotypes represent the most common b + allele in these two groups. The black (B) allele was absent from our samples. Overall, our results suggest that white and pigmented individuals form two different populations, and that the traditional color classification used by Brazilian breeders cannot accurately predict the genotypes at the bronze locus

Landscape genetics outperforms habitat suitability in predicting landscape resistance for congeneric cat species

Aim: The use of landscape resistance maps to model connectivity has become an indispensable tool for species conservation. However, different methods can be used to estimate landscape resistance, but there is no consensus on which is the most reliable one. Therefore, comparing the performance of those methods in predicting resistance can be quite useful to understand their limitations and conservation implications. Our goal was to evaluate the accuracy of two commonly used approaches, habitat suitability modelling and landscape genetics, in estimating landscape resistance to genetic connectivity of two species of Neotropical cats (Leopardus guttulus and L. geoffroyi) across their ranges. Location: South America. Taxon: Felidae—L. guttulus and L. geoffroyi. Methods: For both species, we optimized a landscape genetics resistance surface using a restricted multivariate optimization approach and transformed a habitat suitability map into a resistance layer. We compared landscape resistance models created by these two approaches based on the models´ Akaike information criterion scores and evaluated the similarities and differences in their predictions by calculating the correlation between the resistance layers and generating difference maps. Results: The genetic approach greatly outperformed the habitat suitability approach in explaining movement driving gene flow for both species. For the studied species, habitat preference and genetic connectivity are influenced by different landscape features. Habitat alteration imposes great resistance for genetic connectivity, and the presence of natural vegetation remnants within altered environments is essential for their conservation. Main conclusions: For the studied species, the transformation of habitat suitability models into resistance surfaces is a poor proxy for permeability to dispersal, and the use of genetic data is more reliable in modelling connectivity for species conservation. Habitat suitability and landscape resistance are not equivalent or even proportional for these species.Fil: Charão Sartor, Caroline. Pontificia Universidade Católica do Rio Grande do Sul; Brasil. Universidade Federal do Rio Grande do Sul; BrasilFil: Wan, Ho Yi. Humboldt-Universität zu Berlin; AlemaniaFil: Pereira, Javier Adolfo. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; ArgentinaFil: Eizirik, Eduardo. Pontificia Universidade Católica do Rio Grande do Sul; BrasilFil: Campos Trigo, Tatiane. Instituto Pró-Carnívoros; BrasilFil: de Freitas, Thales Renato O.. Universidade Federal do Rio Grande do Sul; BrasilFil: Cushman, Samuel Alan. No especifíca

DNA matrices

DNA_matrices_Sigmodontinae_285taxa_11gene

Gene and taxon sampling

Details of gene and taxon sampling used for tree constructio