Optomechanical control of molecular motors

The majority of mechanisms that can be deployed for optical micromanipulation are not especially amenable for extension into the nanoscale. At the molecular level, the rich variety of schemes that have been proposed to achieve mechanical effect using light commonly exploit specific chemical structures; familiar examples are compounds that can fold by cis-trans isomerization, or the mechanically interlocked architectures of rotaxanes. However, such systems are synthetically highly challenging, and few of them can realistically form the basis for a true molecular motor. Developing the basis for a very different strategy based on programmed electronic excitation, this paper explores the possibility of producing controlled mechanical motion through optically induced modifications of intermolecular force fields, not involving the limitations associated with using photochemical change, nor the high intensities required to produce and manipulate optical binding forces between molecules. Calculations reveal that significant, rapidly responsive effects can be achieved in relatively simple systems. By the use of suitable laser pulse sequences, the possibilities include the generation of continuous rotary motion, the ultimate aim of molecular motor design

Extended quantum conditional entropy and quantum uncertainty inequalities

Quantum states can be subjected to classical measurements, whose incompatibility, or uncertainty, can be quantified by a comparison of certain entropies. There is a long history of such entropy inequalities between position and momentum. Recently these inequalities have been generalized to the tensor product of several Hilbert spaces and we show here how their derivations can be shortened to a few lines and how they can be generalized. All the recently derived uncertainty relations utilize the strong subadditivity (SSA) theorem; our contribution relies on directly utilizing the proof technique of the original derivation of SSA.Comment: 4 page

Genus Topology of the Cosmic Microwave Background from WMAP

We have independently measured the genus topology of the temperature fluctuations in the cosmic microwave background seen by the Wilkinson Microwave Anisotropy Probe (WMAP). A genus analysis of the WMAP data indicates consistency with Gaussian random-phase initial conditions, as predicted by standard inflation.Comment: PDF: http://www.astro.virginia.edu/~wnc5c/WMAPtopology.pd

A Nanophotonic Structure Containing Living Photosynthetic Bacteria

Photosynthetic organisms rely on a series of self-assembled nanostructures with tuned electronic energy levels in order to transport energy from where it is collected by photon absorption, to reaction centers where the energy is used to drive chemical reactions. In the photosynthetic bacteria Chlorobaculum tepidum, a member of the green sulfur bacteria family, light is absorbed by large antenna complexes called chlorosomes to create an exciton. The exciton is transferred to a protein baseplate attached to the chlorosome, before migrating through the Fenna-Matthews-Olson complex to the reaction center. Here, it is shown that by placing living Chlorobaculum tepidum bacteria within a photonic microcavity, the strong exciton-photon coupling regime between a confined cavity mode and exciton states of the chlorosome can be accessed, whereby a coherent exchange of energy between the bacteria and cavity mode results in the formation of polariton states. The polaritons have energy distinct from that of the exciton which can be tuned by modifying the energy of the optical modes of the microcavity. It is believed that this is the first demonstration of the modification of energy levels within living biological systems using a photonic structure

Statistics and geometry of cosmic voids

We introduce new statistical methods for the study of cosmic voids, focusing on the statistics of largest size voids. We distinguish three different types of distributions of voids, namely, Poisson-like, lognormal-like and Pareto-like distributions. The last two distributions are connected with two types of fractal geometry of the matter distribution. Scaling voids with Pareto distribution appear in fractal distributions with box-counting dimension smaller than three (its maximum value), whereas the lognormal void distribution corresponds to multifractals with box-counting dimension equal to three. Moreover, voids of the former type persist in the continuum limit, namely, as the number density of observable objects grows, giving rise to lacunar fractals, whereas voids of the latter type disappear in the continuum limit, giving rise to non-lacunar (multi)fractals. We propose both lacunar and non-lacunar multifractal models of the cosmic web structure of the Universe. A non-lacunar multifractal model is supported by current galaxy surveys as well as cosmological $N$-body simulations. This model suggests, in particular, that small dark matter halos and, arguably, faint galaxies are present in cosmic voids.Comment: 39 pages, 8 EPS figures, supersedes arXiv:0802.038

Strong Exciton-Photon Coupling in a Nanographene Filled Microcavity

Dibenzo[hi,st]ovalene (DBOV)-a quasi-zero-dimensional "nanographene"-displays strong, narrow, and well-defined optical-absorption transitions at room temperature. On placing a DBOV-doped polymer film into an optical microcavity, we demonstrate strong coupling of the 0 → 0' electronic transition to a confined cavity mode, with a coupling energy of 126 meV. Photoluminescence measurements indicate that the polariton population is distributed at energies approximately coincident with the emission of the DBOV, indicating a polariton population via an optical pumping mechanism

Non--Linear Evolution of Cosmological Perturbations

In these lecture notes I review the theory of the non--linear evolution of cosmological perturbations in a self--gravitating collisionless medium, with vanishing vorticity. The problem is first analyzed in the context of the Newtonian approximation, where the basic properties of the Zel'dovich, frozen--flow and adhesion algorithms are introduced. An exact general relativistic formalism is then presented and it is shown how the Newtonian limit, both in Lagrangian and Eulerian coordinates, can be recovered. A general discussion on the possible role of possible relativistic effects in the cosmological structure formation context is finally given.Comment: 17 pages, tex using lecproc.cmm (enclosed), no figures. To appear in Proc. Laredo Summer School "The universe at high-z, large scale structure and the cosmic microwave background". Eds. E. Martinez-Gonzalez and J.L. Sanz. Lecture Notes in Physics (Springer-Verlag

Relativistic effects and primordial non-Gaussianity in the galaxy bias

When dealing with observables, one needs to generalize the bias relation between the observed galaxy fluctuation field to the underlying matter distribution in a gauge-invariant way. We provide such relation at second-order in perturbation theory adopting the local Eulerian bias model and starting from the observationally motivated uniform-redshift gauge. Our computation includes the presence of primordial non-Gaussianity. We show that large scale-dependent relativistic effects in the Eulerian bias arise independently from the presence of some primordial non-Gaussianity. Furthermore, the Eulerian bias inherits from the primordial non-Gaussianity not only a scale-dependence, but also a modulation with the angle of observation when sources with different biases are correlated.Comment: 12 pages, LaTeX file; version accepted for publication in JCA

Discrete molecular dynamics simulations of peptide aggregation

We study the aggregation of peptides using the discrete molecular dynamics simulations. At temperatures above the alpha-helix melting temperature of a single peptide, the model peptides aggregate into a multi-layer parallel beta-sheet structure. This structure has an inter-strand distance of 0.48 nm and an inter-sheet distance of 1.0 nm, which agree with experimental observations. In this model, the hydrogen bond interactions give rise to the inter-strand spacing in beta-sheets, while the Go interactions among side chains make beta-strands parallel to each other and allow beta-sheets to pack into layers. The aggregates also contain free edges which may allow for further aggregation of model peptides to form elongated fibrils.Comment: 15 pages, 8 figure