Integrated analysis of dysregulated long non-coding RNAs/microRNAs/mRNAs in metastasis of lung adenocarcinoma

Abstract Background Lung adenocarcinoma (LUAD), largely remains a primary cause of cancer-related death worldwide. The molecular mechanisms in LUAD metastasis have not been completely uncovered. Methods In this study, we identified differentially expressed genes (DEGs), miRNAs (DEMs) and lncRNAs (DELs) underlying metastasis of LUAD from The Cancer Genome Atlas database. Intersection mRNAs were used to perform gene ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway and co-expression network analysis. In addition, survival analyses of intersection mRNAs were conducted. Finally, intersection mRNAs, miRNAs and lncRNAs were subjected to construct miRNA-mRNA-lncRNA network. Results A total of 1015 DEGs, 54 DEMs and 22 DELs were identified in LUAD metastasis and non-metastasis samples. GO and KEGG pathway analysis had proven that the functions of intersection mRNAs were closely related with many important processes in cancer pathogenesis. Among the co-expression interactions network, 22 genes in the co-expression network were over the degree 20. These genes imply that they have connections with many other gene nodes. In addition, 14 target genes (ARHGAP11A, ASPM, HELLS, PRC1, TMPO, ARHGAP30, CD52, IL16, IRF8, P2RY13, PRKCB, PTPRC, SASH3 and TRAF3IP3) were found to be associated with survival in patients with LUAD significantly (log-rank P < 0.05). Two lncRNAs (LOC96610 and ADAM6) acting as ceRNAs were identified based on the miRNA-mRNA-lncRNA network. Conclusions Taken together, the results may provide a novel perspective to develop a multiple gene diagnostic tool for LUAD prognosis, which might also provide potential biomarkers or therapeutic targets for LUAD

Auxin response factors (ARFs) differentially regulate rice antiviral immune response against rice dwarf virus.

There are 25 auxin response factors (ARFs) in the rice genome, which play critical roles in regulating myriad aspects of plant development, but their role (s) in host antiviral immune defense and the underneath mechanism remain largely unknown. By using the rice-rice dwarf virus (RDV) model system, here we report that auxin signaling enhances rice defense against RDV infection. In turn, RDV infection triggers increased auxin biosynthesis and accumulation in rice, and that treatment with exogenous auxin reduces OsIAA10 protein level, thereby unleashing a group of OsIAA10-interacting OsARFs to mediate downstream antiviral responses. Strikingly, our genetic data showed that loss-of-function mutants of osarf12 or osarf16 exhibit reduced resistance whereas osarf11 mutants display enhanced resistance to RDV. In turn, OsARF12 activates the down-stream OsWRKY13 expression through direct binding to its promoter, loss-of-function mutants of oswrky13 exhibit reduced resistance. These results demonstrated that OsARF 11, 12 and 16 differentially regulate rice antiviral defense. Together with our previous discovery that the viral P2 protein stabilizes OsIAA10 protein via thwarting its interaction with OsTIR1 to enhance viral infection and pathogenesis, our results reveal a novel auxin-IAA10-ARFs-mediated signaling mechanism employed by rice and RDV for defense and counter defense responses

On-Surface Synthesis of Nitrogen-Substituted Gold-Phosphorus Porous Network

Porous metal-organic frameworks (MOFs) have become one of the fastest growing fields with broad applications due to the presence of various active sites (e.g., cavities, metal nodes, and organic linkers). Notably, an on-surface synthesis represents a facile method for the fabrication of two-dimensional (2D) MOFs, where the substrate not only supports and dictates the symmetry of the surface nanostructures but also provides the metal atoms to form the metal nodes. However, the realization of on-surface synthesized 2D metal-inorganic porous networks is rarely explored, except for a recently reported gold-phosphorus network. Here, we integrate one more dimension into the growth process (activated gas phase atoms) and demonstrate the on-surface synthesis of ternary metal-inorganic gold-phosphorus-nitrogen porous networks on Au(111). The atomic structure is precisely identified through a combination of low-temperature scanning tunneling microscopy, density functional theory calculations, and X-ray photoelectron spectroscopy. Using the thermal energy from the heated Au(111) substrate, the phosphorus precursor can simultaneously grab gold atoms from the surface and nitrogen atoms from activated nitrogen gas to build up a long-range ordered 2D surface porous structure. Our study opens a completely new platform for the on-surface synthesis of tailored metal-inorganic frameworks. </p

Differences in oxidation-reduction kinetics and mobility of Cu species in fresh and SO2-poisoned Cu-SSZ-13 catalysts

10.1016/j.apcatb.2020.119756Applied Catalysis B: Environmental11975

Fluorination-guided Li-anchoring behaviors on phthalocyanines

Understanding the interactions between metallic lithium (Li) and the anchoring sites/groups is essential for the design of stable host materials and artificial interphases in lithium metal batteries (LMBs). Here, we investigate the interactions of lithium with the polar organic functional groups in copper(II) hexadecafluorophthalocyanine (F16CuPc) and copper(II) phthalocyanine (CuPc) through the combination of in-situ X-ray photoelectron spectroscopy (XPS), ultraviolet photoelectron spectroscopy (UPS), synchrotron-based near-edge X-ray absorption fine structures (NEXAFS), and density functional theory (DFT) calculations. It is revealed that the highly polar C-F bonds can anchor the Li atom via ionic Li-F interaction around the outer aza bridge N atoms in F16CuPc, while Li tends to interact with the inner pyrrolic N atoms around the central Cu in CuPc. The central Cu(II) ions in both molecules are reduced to Cu(I) upon interaction with Li. Electrons are transferred from Li to the lowest unoccupied molecular orbitals (LUMO) of both F16CuPc and CuPc molecules, as revealed by the UPS and NEXAFS measurements. Our systematic study can shed light on the design of anode materials by adding polar functional groups for applications in lithium metal batteries (LMBs).Ministry of Education (MOE)The authors acknowledge the financial support from the Natural Science Foundation of China (U2032147), Singapore MOE Tier II grant R143-000-A29-112, and Academic Research Fund Tie I grant RG104/18

Pressure-dependent band-bending in ZnO: A near-ambientpressure X-ray photoelectron spectroscopy study

Journal of Energy Chemistr

Designing Kagome lattice from potassium atoms on phosphorus-gold surface alloy

Materials with flat bands are considered as ideal platforms to explore strongly correlated physics such as the fractional quantum hall effect, high-temperature superconductivity, and more. In theory, a Kagome lattice with only nearest-neighbor hopping can give rise to a flat band. However, the successful fabrication of Kagome lattices is still very limited. Here, we provide a new design principle to construct the Kagome lattice by trapping atoms into Kagome arrays of potential valleys, which can be realized on a potassium-decorated phosphorus-gold surface alloy. Theoretical calculations show that the flat band is less correlated with the neighboring trivial electronic bands, which can be further isolated and dominate around the Fermi energy with increased Kagome lattice parameters of potassium atoms. Our results provide a new strategy for constructing Kagome lattices, which serve as an ideal platform to study topological and more general flat band phenomena.</p

Alkannin Inhibited Hepatic Inflammation in Diabetic Db/Db Mice

Background/Aims: The current study was designed to investigate the protective role of alkannin (ALK) on liver injury in diabetic C57BL/KsJ-db/db mice and explore its potential mechanisms. Methods: An oral glucose tolerance test (OGTT) was performed. The levels of insulin, alanine aminotransferase (ALT), aspartate aminotransaminase (AST), total cholesterol (TC) and triglyceride (TG) were determined by commercial kits. The pro-inflammatory cytokines interleukin (IL)-1β, IL-6 and tumour necrosis factor (TNF)-α were determined by ELISA. The levels of the ROCK/NF-κB pathway were determined by Western blotting. Results: The contents of pro-inflammatory cytokines interleukin (IL)-1β, IL-6 and tumour necrosis factor (TNF)-α were inhibited by ALK, metformin or fasudil in diabetic db/db mice. Further, Western blotting analysis showed that the expression of Rho, ROCK1, ROCK2, p-NF-κBp65, and p-IκBα was significantly reversed by ALK treatment. In human hepatic HepG2 cells, the hepatoprotective effects of ALK were further characterized. With response to palmitic acid-challenge, increased amounts of insulin, ALT, AST, TG, and TC were observed, whereas ALK pretreatment significantly inhibited their leakage in HepG2 cells without appreciable cytotoxic effects. The inflammation condition was recovered with ALK treatment as shown by changes of IL-1β, IL-6 and TNF-α. Further, Western blotting analysis also suggested that ALK improves hepatic inflammation in a Rho-kinase pathway. Conclusion: The present study successfully investigated the role of Rho-kinase signalling in diabetic liver injury. ALK exhibited hepatoprotective effects in diabetic db/db mice, and it might act through improving hepatic inflammation through the Rho-kinase pathway