gap: Genetic Analysis Package

A preliminary attempt at collecting tools and utilities for genetic data as an R package called gap is described. Genomewide association is then described as a specific example, linking the work of Risch and Merikangas (1996), Long and Langley (1997) for family-based and population-based studies, and the counterpart for case-cohort design established by Cai and Zeng (2004). Analysis of staged design as outlined by Skol et al. (2006) and associate methods are discussed. The package is flexible, customizable, and should prove useful to researchers especially in its application to genomewide association studies.

On Locality of Schmidt-Correlated States

We review some results on the equivalence of quantum states under local unitary transformations (LUT). In particular, the classification of two-qubit Schmidt correlated (SC) states under LUT is investigated. By presenting the standard form of quantum states under LUT, the sufficient and necessary conditions of whether two different SC states are local unitary equivalent are provided. The correlations of SC states are also discussed.Comment: 14 page

Context Modeling for Ranking and Tagging Bursty Features in Text Streams

Bursty features in text streams are very useful in many text mining applications. Most existing studies detect bursty features based purely on term frequency changes without taking into account the semantic contexts of terms, and as a result the detected bursty features may not always be interesting or easy to interpret. In this paper we propose to model the contexts of bursty features using a language modeling approach. We then propose a novel topic diversity-based metric using the context models to find newsworthy bursty features. We also propose to use the context models to automatically assign meaningful tags to bursty features. Using a large corpus of a stream of news articles, we quantitatively show that the proposed context language models for bursty features can effectively help rank bursty features based on their newsworthiness and to assign meaningful tags to annotate bursty features. ? 2010 ACM.EI