The zz-matching problem on bipartite graphs

The $z$-matching problem on bipartite graphs is studied with a local algorithm. A $z$-matching ($z \ge 1$) on a bipartite graph is a set of matched edges, in which each vertex of one type is adjacent to at most $1$ matched edge and each vertex of the other type is adjacent to at most $z$ matched edges. The $z$-matching problem on a given bipartite graph concerns finding $z$-matchings with the maximum size. Our approach to this combinatorial optimization are of two folds. From an algorithmic perspective, we adopt a local algorithm as a linear approximate solver to find $z$-matchings on general bipartite graphs, whose basic component is a generalized version of the greedy leaf removal procedure in graph theory. From an analytical perspective, in the case of random bipartite graphs with the same size of two types of vertices, we develop a mean-field theory for the percolation phenomenon underlying the local algorithm, leading to a theoretical estimation of $z$-matching sizes on coreless graphs. We hope that our results can shed light on further study on algorithms and computational complexity of the optimization problem.Comment: 15 pages, 3 figure

gap: Genetic Analysis Package

A preliminary attempt at collecting tools and utilities for genetic data as an R package called gap is described. Genomewide association is then described as a specific example, linking the work of Risch and Merikangas (1996), Long and Langley (1997) for family-based and population-based studies, and the counterpart for case-cohort design established by Cai and Zeng (2004). Analysis of staged design as outlined by Skol et al. (2006) and associate methods are discussed. The package is flexible, customizable, and should prove useful to researchers especially in its application to genomewide association studies.

Two faces of greedy leaf removal procedure on graphs

The greedy leaf removal (GLR) procedure on a graph is an iterative removal of any vertex with degree one (leaf) along with its nearest neighbor (root). Its result has two faces: a residual subgraph as a core, and a set of removed roots. While the emergence of cores on uncorrelated random graphs was solved analytically, a theory for roots is ignored except in the case of Erd\"{o}s-R\'{e}nyi random graphs. Here we analytically study roots on random graphs. We further show that, with a simple geometrical interpretation and a concise mean-field theory of the GLR procedure, we reproduce the zero-temperature replica symmetric estimation of relative sizes of both minimal vertex covers and maximum matchings on random graphs with or without cores.Comment: 39 pages, 5 figures, and 3 table