Text Style Transfer Back-Translation

Back Translation (BT) is widely used in the field of machine translation, as it has been proved effective for enhancing translation quality. However, BT mainly improves the translation of inputs that share a similar style (to be more specific, translation-like inputs), since the source side of BT data is machine-translated. For natural inputs, BT brings only slight improvements and sometimes even adverse effects. To address this issue, we propose Text Style Transfer Back Translation (TST BT), which uses a style transfer model to modify the source side of BT data. By making the style of source-side text more natural, we aim to improve the translation of natural inputs. Our experiments on various language pairs, including both high-resource and low-resource ones, demonstrate that TST BT significantly improves translation performance against popular BT benchmarks. In addition, TST BT is proved to be effective in domain adaptation so this strategy can be regarded as a general data augmentation method. Our training code and text style transfer model are open-sourced.Comment: acl2023, 14 pages, 4 figures, 19 table

R-BI: Regularized Batched Inputs enhance Incremental Decoding Framework for Low-Latency Simultaneous Speech Translation

Incremental Decoding is an effective framework that enables the use of an offline model in a simultaneous setting without modifying the original model, making it suitable for Low-Latency Simultaneous Speech Translation. However, this framework may introduce errors when the system outputs from incomplete input. To reduce these output errors, several strategies such as Hold-$n$, LA-$n$, and SP-$n$ can be employed, but the hyper-parameter $n$ needs to be carefully selected for optimal performance. Moreover, these strategies are more suitable for end-to-end systems than cascade systems. In our paper, we propose a new adaptable and efficient policy named "Regularized Batched Inputs". Our method stands out by enhancing input diversity to mitigate output errors. We suggest particular regularization techniques for both end-to-end and cascade systems. We conducted experiments on IWSLT Simultaneous Speech Translation (SimulST) tasks, which demonstrate that our approach achieves low latency while maintaining no more than 2 BLEU points loss compared to offline systems. Furthermore, our SimulST systems attained several new state-of-the-art results in various language directions.Comment: Preprin

Laboratory-Evolved Mutants of an Exogenous Global Regulator, IrrE from Deinococcus radiodurans, Enhance Stress Tolerances of Escherichia coli

The tolerance of cells toward different stresses is very important for industrial strains of microbes, but difficult to improve by the manipulation of single genes. Traditional methods for enhancing cellular tolerances are inefficient and time-consuming. Recently, approaches employing global transcriptional or translational engineering methods have been increasingly explored. We found that an exogenous global regulator, irrE from an extremely radiation-resistant bacterium, Deinococcus radiodurans, has the potential to act as a global regulator in Escherichia coli, and that laboratory-evolution might be applied to alter this regulator to elicit different phenotypes for E. coli.To extend the methodology for strain improvement and to obtain higher tolerances toward different stresses, we here describe an approach of engineering irrE gene in E. coli. An irrE library was constructed by randomly mutating the gene, and this library was then selected for tolerance to ethanol, butanol and acetate stresses. Several mutants showing significant tolerances were obtained and characterized. The tolerances of E. coli cells containing these mutants were enhanced 2 to 50-fold, based on cell growth tests using different concentrations of alcohols or acetate, and enhanced 10 to 100-fold based on ethanol or butanol shock experiments. Intracellular reactive oxygen species (ROS) assays showed that intracellular ROS levels were sharply reduced for cells containing the irrE mutants. Sequence analysis of the mutants revealed that the mutations distribute cross all three domains of the protein.To our knowledge, this is the first time that an exogenous global regulator has been artificially evolved to suit its new host. The successes suggest the possibility of improving tolerances of industrial strains by introducing and engineering exogenous global regulators, such as those from extremophiles. This new approach can be applied alone or in combination with other global methods, such as global transcriptional machinery engineering (gTME) for strain improvements

Characterization of Two <i>Pseudomonas aeruginosa</i> Viruses vB_PaeM_SCUT-S1 and vB_PaeM_SCUT-S2

The sophisticated antibiotic resistance mechanism of Pseudomonas aeruginosa has urged the development of alternative antibacterial strategies. Phage therapy has been proven successful for the treatment of multidrug-resistant infections. In this study, we reported two virulent P. aeruginosa phages, vB_PaeM_SCUT-S1 (S1) and vB_PaeM_SCUT-S2 (S2), which were characterized at morphological, genomic, and proteomic levels. Phages S1 and S2 were assigned to the Myoviridae family. The genome sequencing showed that the genome size of Phage S1 was 66,046 bp and that of Phage S2 was 94,434 bp. The phylogenetic tree indicated that the two phages were distantly related to each other and were classified in the genera Pbunavirus and Pakpunavirus respectively. Thirty-one proteins were identified for each phage by mass spectrometry and were used to substantiate the function of the predicted coding genes. The two phages inhibited the growth of P. aeruginosa strain PAO1 at low multiplicity of infection levels and had good performance both on preventing biofilm formation and eradicating preformed biofilms. They were also stable over a wide range of temperature and pH values, supporting their potential use in the treatment of P. aeruginosa infections

An evolved xylose transporter from <it>Zymomonas mobilis </it>enhances sugar transport in <it>Escherichia coli</it>

Abstract Background Xylose is a second most abundant sugar component of lignocellulose besides glucose. Efficient fermentation of xylose is important for the economics of biomass-based biorefineries. However, sugar mixtures are sequentially consumed in xylose co-fermentation with glucose due to carbon catabolite repression (CCR) in microorganisms. As xylose transmembrance transport is one of the steps repressed by CCR, it is therefore of interest to develop a transporter that is less sensitive to the glucose inhibition or CCR. Results The glucose facilitator protein Glf transporter from Zymomonas mobilis, also an efficient transporter for xylose, was chosen as the target transporter for engineering to eliminate glucose inhibition on xylose uptake. The evolution of Glf transporter was carried out with a mixture of glucose and xylose in E. coli. Error-prone PCR and random deletion were employed respectively in two rounds of evolution. Aided by a high-throughput screening assay using xylose analog p-nitrophenyl-β-D-xylopyranoside (pNPX) in 96-well plates, a best mutant 2-RD5 was obtained that contains several mutations, and a deletion of 134 residues (about 28% of total residues), or three fewer transmembrane sections (TMSs). It showed a 10.8-fold improvement in terms of pNPX transport activity in the presence of glucose. The fermentation performance results showed that this mutant improved xylose consumption by 42% with M9 minimal medium containing 20 g L-1 xylose only, while with the mixture sugar of xylose and glucose, 28% more glucose was consumed, but no obvious co-utilization of xylose was observed. Further glucose fed-batch experiments suggested that the intracellular metabolism of xylose was repressed by glucose. Conclusions Through random mutagenesis and partial deletion coupled with high-throughput screening, a mutant of the Glf transporter (2-RD5) was obtained that relieved the inhibition of xylose transport by glucose. The fermentation tests revealed that 2-RD5 was advantageous in xylose and glucose uptakes, while no obvious advantage was seen for xylose co-consumption when co-fermented with glucose. Further efforts could focus on reducing CCR-mediated repression of intracellular metabolism of xylose. Glf should also serve as a useful model to further exploit the molecular mechanism of xylose transport and the CCR-mediated inhibition.</p

Experimental study on three-effect tubular solar still under vacuum and immersion cooling

Solar still is widely used for supplying fresh water to small communities in remote areas. One drawback of this technique lies in the low freshwater yield. Recent studies on stills of multi-effect and vacuum design proved their potential for high yield. However, such systems suffer from high electricity consumption and insufficient cooling. In this study, a novel system with a periodic pressure control scheme and water immersion cooling has been proposed to mitigate these defects. A prototype was constructed and associated with a 0.19-m2 solar panel. A 5-day outdoor experiment was conducted to evaluate the overall performance. Results indicated that the highest yield during the test was 9.8 kg/m2 at operating pressure of 40 kPa. A significant performance ratio of 1.87 was achieved with immersion cooling, i.e., 0.42 higher than that with air cooling. Thermal analysis showed that the heat transfer coefficient of water immersion cooling was 15–50 times higher than that of air cooling. Compared with previous vacuum-operated systems, the specific electricity consumption of maintaining vacuum was greatly reduced, i.e., from 21.6 kJ/kg to 1.7 kJ/kg for the case at 60 kPa. The forecast cost of the distilled water is $0.012/kg, representing an affordable desalination technique for off-grid communities

Engineered global regulator H-NS improves the acid tolerance of E. coli

Abstract Background Acid stress is often encountered during industrial fermentation as a result of the accumulation of acidic metabolites. Acid stress increases the intracellular acidity and can cause DNA damage and denaturation of essential enzymes, thus leading to a decrease of growth and fermentation yields. Although acid stress can be relieved by addition of a base to the medium, fermentations with acid-tolerant strains are generally considered much more efficient and cost-effective. Results In this study, the global regulator H-NS was found to have significant influence on the acid tolerance of E. coli. The final OD600 of strains overexpressing H-NS increased by 24% compared to control, when cultured for 24 h at pH 4.5 using HCl as an acid agent. To further improve the acid tolerance, a library of H-NS was constructed by error-prone PCR and subjected to selection. Five mutants that conferred a significant growth advantage compared to the control strain were obtained. The final OD600 of strains harboring the five H-NS mutants was enhanced by 26–53%, and their survival rate was increased by 10- to 100-fold at pH 2.5. Further investigation showed that the improved acid tolerance of H-NS mutants coincides with the activation of multiple acid resistance mechanisms, in particular the glutamate- and glutamine-dependent acid resistance system (AR2). The improved acid tolerance of H-NS mutants was also demonstrated in media acidified by acetic acid and succinic acid, which are common acidic fermentation by-products or products. Conclusions The results obtained in this work demonstrate that the engineering of H-NS can enhance the acid tolerance of E. coli. More in general, this study shows the potential of the engineering of global regulators acting as repressors, such as H-NS, as a promising method to obtain phenotypes of interest. This approach could expand the spectrum of application of global transcription machinery engineering

Alcohol Induces Zebrafish Skeletal Muscle Atrophy through HMGB1/TLR4/NF-&kappa;B Signaling

Excessive alcohol consumption can cause alcoholic myopathy, but the molecular mechanism is still unclear. In this study, zebrafish were exposed to 0.5% alcohol for eight weeks to investigate the effect of alcohol on skeletal muscle and its molecular mechanism. The results showed that the body length, body weight, cross-sectional area of the skeletal muscle fibers, Ucrit, and MO2max of the zebrafish were significantly decreased after alcohol exposure. The expression of markers of skeletal muscle atrophy and autophagy was increased, and the expression of P62 was significantly reduced. The content of ROS, the mRNA expression of sod1 and sod2, and the protein expression of Nox2 were significantly increased. In addition, we found that the inflammatory factors Il1&beta; and Tnf&alpha; were significantly enriched in skeletal muscle, and the expression of the HMGB1/TLR4/NF-&kappa;B signaling axis was also significantly increased. In summary, in this study, we established a zebrafish model of alcohol-induced skeletal muscle atrophy and further elucidated its pathogenesis

Zebrafish Congenital Heart Disease Models: Opportunities and Challenges

Congenital heart defects (CHDs) are common human birth defects. Genetic mutations potentially cause the exhibition of various pathological phenotypes associated with CHDs, occurring alone or as part of certain syndromes. Zebrafish, a model organism with a strong molecular conservation similar to humans, is commonly used in studies on cardiovascular diseases owing to its advantageous features, such as a similarity to human electrophysiology, transparent embryos and larvae for observation, and suitability for forward and reverse genetics technology, to create various economical and easily controlled zebrafish CHD models. In this review, we outline the pros and cons of zebrafish CHD models created by genetic mutations associated with single defects and syndromes and the underlying pathogenic mechanism of CHDs discovered in these models. The challenges of zebrafish CHD models generated through gene editing are also discussed, since the cardiac phenotypes resulting from a single-candidate pathological gene mutation in zebrafish might not mirror the corresponding human phenotypes. The comprehensive review of these zebrafish CHD models will facilitate the understanding of the pathogenic mechanisms of CHDs and offer new opportunities for their treatments and intervention strategies