A new method for evaluating lung volume: AI-3D reconstruction

Objective: This study aims to explore the clinical application of an AI-3D reconstruction system in measuring lung volume and analyze its practical value in donor-recipient size matching in lung transplantation.Methods: The study retrospectively collected data from 75 subjects who underwent a plethysmography examination and lung CT at the First Hospital of Jilin University. General data and information related to lung function, and imaging results were collected. The correlation between actual total lung volume (aTLV), predicted total lung volume (pTLV), and artificial intelligence three-dimensional reconstruction CT lung volume (AI-3DCTVol) was analyzed for the overall, male, and female groups. The correlation coefficient and the absolute error percentage with pTLV and AI-3DCTVol were obtained.Results: In the overall, male, and female groups, there were statistical differences (p <0.05) between the pTLV formula and AI-3D reconstruction compared to the plethysmography examination value. The ICC between pTLV and aTLV for all study participants was 0.788 (95% CI: 0.515–0.893), p <0.001. Additionally, the ICC value between AI-3D reconstruction and aTLV was 0.792 (95% CI: 0.681–0.866), p <0.001. For male study participants, the ICC between pTLV and aTLV was 0.330 (95% CI: 0.032–0.617), p = 0.006. Similarly, the ICC value between AI-3D reconstruction and aTLV was 0.413 (95% CI: 0.089–0.662), p = 0.007. In the case of female research subjects, the ICC between pTLV and aTLV was 0.279 (95% CI: 0.001–0.523), p = 0.012. Further, the ICC value between AI-3D reconstruction and aTLV was 0.615 (95% CI: 0.561–0.870), p <0.001.Conclusion: The AI-3D reconstruction, as a convenient method, has significant potential for application in lung transplantation

Exogenous spermidine improved drought tolerance in Ilex verticillata seedlings

Winterberry (Ilex verticillata (L.) A. Gray) is a recently introduced ornamental tree species in China that has not been closely investigated for its drought resistance. In this study, we used two-year-old cuttings from I. verticillata (L.) A. Gray and two representative varieties derived from it, I. verticillata ‘Oosterwijk’ and I. verticillata ‘Jim Dandy’, as materials to investigate how this plant responds to drought stress and whether exogenous spermidine (SPD) can alleviate the negative effects caused by drought stress. The results showed that as the degree of drought stress increased, the leaves of winterberry seedlings became chlorotic, and their edges became dry. Similarly, the relative water content, specific leaf weight, chlorophyll content, leaf nitrogen content, net photosynthetic rate, stomatal conductance and transpiration rate were significantly reduced, whereas the content of malondialdehyde continuously increased with the degree of drought stress. The activities of superoxide dismutase, peroxidase, and catalase increased under moderate drought stress and then decreased under severe drought stress. The levels of soluble sugar and abscisic acid continued to increase, while those of auxin and gibberellic acid decreased. When compared with individual drought stress, an increase in the amount of external SPD clearly alleviated the effect of drought stress on winterberry seedlings. The combined phenotypes and physiological indices of the winterberry leaves under drought stress conditions revealed that the drought resistance of the native species was significantly higher than its two varieties. This finding serves as an important theoretical foundation for the popularization and application of I. verticillata (L.) A. Gray and the two varieties

The diploid genome sequence of an Asian individual

Here we present the first diploid genome sequence of an Asian individual. The genome was sequenced to 36-fold average coverage using massively parallel sequencing technology. We aligned the short reads onto the NCBI human reference genome to 99.97% coverage, and guided by the reference genome, we used uniquely mapped reads to assemble a high-quality consensus sequence for 92% of the Asian individual's genome. We identified approximately 3 million single-nucleotide polymorphisms (SNPs) inside this region, of which 13.6% were not in the dbSNP database. Genotyping analysis showed that SNP identification had high accuracy and consistency, indicating the high sequence quality of this assembly. We also carried out heterozygote phasing and haplotype prediction against HapMap CHB and JPT haplotypes (Chinese and Japanese, respectively), sequence comparison with the two available individual genomes (J. D. Watson and J. C. Venter), and structural variation identification. These variations were considered for their potential biological impact. Our sequence data and analyses demonstrate the potential usefulness of next-generation sequencing technologies for personal genomics

Robust estimation of bacterial cell count from optical density

Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data

Chloroplast Genes Are Involved in The Male-Sterility of K-Type CMS in Wheat

The utilization of crop heterosis can greatly improve crop yield. The sterile line is vital for the heterosis utilization of wheat (Triticum aestivum L.). The chloroplast genomes of two sterile lines and one maintainer were sequenced using second-generation high-throughput technology and assembled. The nonsynonymous mutated genes among the three varieties were identified, the expressed difference was further analyzed by qPCR, and finally, the function of the differentially expressed genes was analyzed by the barley stripe mosaic virus-induced gene silencing (BSMV-VIGS) method. A total of 16 genes containing 31 nonsynonymous mutations between K519A and 519B were identified. There were no base mutations in the protein-encoding genes between K519A and YS3038. The chloroplast genomes of 519B and K519A were closely related to the Triticum genus and Aegilops genus, respectively. The gene expression levels of the six selected genes with nonsynonymous mutation sites for K519A compared to 519B were mostly downregulated at the binucleate and trinucleate stages of pollen development. The seed setting rates of atpB-silenced or ndhH-silenced 519B plants by BSMV-VIGS method were significantly reduced. It can be concluded that atpB and the ndhH are likely to be involved in the reproductive transformation of 519B

Determination of Verapamil HCl in Pharmaceutical Preparations by a Fluorescent Nano Probe Based on CdTe/CdS/ZnS Quantum Dots

An analytical technique based on fluorescence quenching of CdTe/CdS/ZnS quantum dots (QDs) was developed to quantify verapamil in commercially available preparations. Various reaction parameters were optimized and the method developed was validated. One way analysis of variance (ANOVA) and post hoc tests at a 5% significance level were performed to justify the significance of the variation in observations. The linear range of the verapamil concentration was 0.25–5 µg/mL while the limit of detection was 20 µg/mL. Recovery and relative standard deviations were not more than ±10% of the actual amount and <5.9%, respectively. Foreign materials, common metal ions and pharmaceutical excipients of dosage forms caused little interference. To verify the application of the analytical method, the quantity of verapamil in commercially available dosage forms was measured. Verapamil content in the tablets and injections was not more than ±10% of the stated amount and it conformed to the specifications of both the British and the United States pharmacopoeias. In the case of statistical analysis, p-value was <0.05 in almost all levels of all parameters except for the optimized level of system. It can be concluded from the results that the designed method is simple, reliable, cost effective, selective, rapid and sensitive enough to be used for quantitative measurement of the verapamil HCl in dosage forms for quality control purposes

Integrated Precise Orbit Determination of Multi-GNSS and Large LEO Constellations

Global navigation satellite system (GNSS) orbits are traditionally determined by observation data of ground stations, which usually need even global distribution to ensure adequate observation geometry strength. However, good tracking geometry cannot be achieved for all GNSS satellites due to many factors, such as limited ground stations and special stationary characteristics for the geostationary Earth orbit (GEO) satellites in the BeiDou constellation. Fortunately, the onboard observations from low earth orbiters (LEO) can be an important supplement to overcome the weakness in tracking geometry. In this contribution, we perform large LEO constellation-augmented multi-GNSS precise orbit determination (POD) based on simulated GNSS observations. Six LEO constellations with different satellites numbers, orbit types, and altitudes, as well as global and regional ground networks, are designed to assess the influence of different tracking configurations on the integrated POD. Then, onboard and ground-based GNSS observations are simulated, without regard to the observations between LEO satellites and ground stations. The results show that compared with ground-based POD, a remarkable accuracy improvement of over 70% can be observed for all GNSS satellites when the entire LEO constellation is introduced. Particularly, BDS GEO satellites can obtain centimeter-level orbits, with the largest accuracy improvement being 98%. Compared with the 60-LEO and 66-LEO schemes, the 96-LEO scheme yields an improvement in orbit accuracy of about 1 cm for GEO satellites and 1 mm for other satellites because of the increase of LEO satellites, but leading to a steep rise in the computational time. In terms of the orbital types, the sun-synchronous-orbiting constellation can yield a better tracking geometry for GNSS satellites and a stronger augmentation than the polar-orbiting constellation. As for the LEO altitude, there are almost no large-orbit accuracy differences among the 600, 1000, and 1400 km schemes except for BDS GEO satellites. Furthermore, the GNSS orbit is found to have less dependence on ground stations when incorporating a large number of LEO. The orbit accuracy of the integrated POD with 8 global stations is almost comparable to the result of integrated POD with a denser global network of 65 stations. In addition, we also present an analysis concerning the integrated POD with a partial LEO constellation. The result demonstrates that introducing part of a LEO constellation can be an effective way to balance the conflict between the orbit accuracy and computational efficiency

Effects of Different Nitrogen Allocation Ratios and Period on Cotton Yield and Nitrogen Utilization

Choosing the proper fertilizer regime for a crop in a given location remains challenging to increase yield, profitability, environmental growth protection, and sustainability. However, the nutrient demand characteristics of cotton in the North China Plain are different at various growth stages. Therefore, we choose the local superior cotton variety (Lumian 532) with high yield as the material, in the present study, we assessed the cotton yield, biomass accumulation and distribution, nitrogen absorption and utilization efficiency, and other parameters by setting four nitrogen allocation ratios (3:5:2, 0:10:0, 3:7:0, and 0:7:3) when the nitrogen application rates were 0, 150, 220, and 300 kg hm−2. The results showed that when the nitrogen application rate was 300 kg hm−2, the growth index, biomass, nitrogen content, and yield of Lumian 532 were the highest, while the nitrogen partial productivity (12.2 and 12.8) was the lowest. When the nitrogen application rate was 220 kg hm−2 and the nitrogen allocation ratio was 3:5:2, the agronomic nitrogen use efficiency (3.2 and 3.5) and nitrogen physiological (24.8 and 25.0) was achieved. When the nitrogen application rate was 150 kg hm−2, the nitrogen partial productivity (20.6 and 20.9) was the highest. In conclusion, the biomass accumulation and distribution, nitrogen use efficiency, yield, and yield composition of Lumian 532 could be effectively regulated by appropriate nitrogen application rate and nitrogen allocation ratio. Therefore, to optimize the yield and improve the nitrogen use efficiency, the optimal nitrogen application rate of Lumian 532 was 220 kg hm−2, and the optimal nitrogen allocation ratio was 3:5:2 in the North China Plain. The results provided practical basis for nutrient demand, cotton yield and ecological protection in different growth stages of cotton in North China Plain