Additional file 1: of Meta-analysis of GWAS on both Chinese and European populations identifies GPR173 as a novel X chromosome susceptibility gene for SLE

Table S1. Complete list of ChIP-seq files used in Intragenomic Replicates (IGR) analysis. Table S2. List of the 48 SNPs with association P value smaller than 1 × 10-4. Table S3. List of the candidate X-linked SLE susceptibility genes. Table S4. List of the 88 SNPs surpassing genome wide significance in L1CAM-MECP2 region. Table S5. Conditional logistic regression results in both Asian GWAS and European GWAS. Table S6. The list of SNVs used in Figure S3A. Figure S1. QQ plot for the cross-population X chromosome meta-analysis data. Figure S2. The LocusZoom Plot showing association significance and local LD for the region around rs13440883 (±200kb). Figure S3. Identification of functional risk-associated SNV shared between Europeans and Asians. Figure S4. LD patterns of the risk-associated SNPs in L1CAM-MECP2 region. (PDF 2421 kb