Learning to Skim Text

Recurrent Neural Networks are showing much promise in many sub-areas of natural language processing, ranging from document classification to machine translation to automatic question answering. Despite their promise, many recurrent models have to read the whole text word by word, making it slow to handle long documents. For example, it is difficult to use a recurrent network to read a book and answer questions about it. In this paper, we present an approach of reading text while skipping irrelevant information if needed. The underlying model is a recurrent network that learns how far to jump after reading a few words of the input text. We employ a standard policy gradient method to train the model to make discrete jumping decisions. In our benchmarks on four different tasks, including number prediction, sentiment analysis, news article classification and automatic Q\&A, our proposed model, a modified LSTM with jumping, is up to 6 times faster than the standard sequential LSTM, while maintaining the same or even better accuracy

Does GNN Pretraining Help Molecular Representation?

Extracting informative representations of molecules using Graph neural networks (GNNs) is crucial in AI-driven drug discovery. Recently, the graph research community has been trying to replicate the success of self-supervised pretraining in natural language processing, with several successes claimed. However, we find the benefit brought by self-supervised pretraining on small molecular data can be negligible in many cases. We conduct thorough ablation studies on the key components of GNN pretraining, including pretraining objectives, data splitting methods, input features, pretraining dataset scales, and GNN architectures, to see how they affect the accuracy of the downstream tasks. Our first important finding is, self-supervised graph pretraining do not always have statistically significant advantages over non-pretraining methods in many settings. Secondly, although noticeable improvement can be observed with additional supervised pretraining, the improvement may diminish with richer features or more balanced data splits. Thirdly, hyper-parameters could have larger impacts on accuracy of downstream tasks than the choice of pretraining tasks, especially when the scales of downstream tasks are small. Finally, we provide our conjectures where the complexity of some pretraining methods on small molecules might be insufficient, followed by empirical evidences on different pretraining datasets