The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance

INTRODUCTION Investment in Africa over the past year with regard to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) sequencing has led to a massive increase in the number of sequences, which, to date, exceeds 100,000 sequences generated to track the pandemic on the continent. These sequences have profoundly affected how public health officials in Africa have navigated the COVID-19 pandemic. RATIONALE We demonstrate how the first 100,000 SARS-CoV-2 sequences from Africa have helped monitor the epidemic on the continent, how genomic surveillance expanded over the course of the pandemic, and how we adapted our sequencing methods to deal with an evolving virus. Finally, we also examine how viral lineages have spread across the continent in a phylogeographic framework to gain insights into the underlying temporal and spatial transmission dynamics for several variants of concern (VOCs). RESULTS Our results indicate that the number of countries in Africa that can sequence the virus within their own borders is growing and that this is coupled with a shorter turnaround time from the time of sampling to sequence submission. Ongoing evolution necessitated the continual updating of primer sets, and, as a result, eight primer sets were designed in tandem with viral evolution and used to ensure effective sequencing of the virus. The pandemic unfolded through multiple waves of infection that were each driven by distinct genetic lineages, with B.1-like ancestral strains associated with the first pandemic wave of infections in 2020. Successive waves on the continent were fueled by different VOCs, with Alpha and Beta cocirculating in distinct spatial patterns during the second wave and Delta and Omicron affecting the whole continent during the third and fourth waves, respectively. Phylogeographic reconstruction points toward distinct differences in viral importation and exportation patterns associated with the Alpha, Beta, Delta, and Omicron variants and subvariants, when considering both Africa versus the rest of the world and viral dissemination within the continent. Our epidemiological and phylogenetic inferences therefore underscore the heterogeneous nature of the pandemic on the continent and highlight key insights and challenges, for instance, recognizing the limitations of low testing proportions. We also highlight the early warning capacity that genomic surveillance in Africa has had for the rest of the world with the detection of new lineages and variants, the most recent being the characterization of various Omicron subvariants. CONCLUSION Sustained investment for diagnostics and genomic surveillance in Africa is needed as the virus continues to evolve. This is important not only to help combat SARS-CoV-2 on the continent but also because it can be used as a platform to help address the many emerging and reemerging infectious disease threats in Africa. In particular, capacity building for local sequencing within countries or within the continent should be prioritized because this is generally associated with shorter turnaround times, providing the most benefit to local public health authorities tasked with pandemic response and mitigation and allowing for the fastest reaction to localized outbreaks. These investments are crucial for pandemic preparedness and response and will serve the health of the continent well into the 21st century

Noise utilization as an approach for reducing energy consumption in street lighting.

Noise is considered as one of the challenging problems in big cities. However, this noise could be utilized in producing energy especially in dense urban areas. Sound as a form of mechanical energy, it can be converted to electric energy through many approaches including heating, by using the diaphragm and through using piezoelectric materials. This research aims at utilizing noise through using piezoelectric materials as an approach of conversion to produce green sustainable electric energy that can be used to decrease the energy consumption from non-renewable sources and utilizing this energy in street lighting. The study was carried in three bus stations in Alexandria by having measurements during weekdays and weekends in order to study the noise produced in the selected stations and the amount of electric energy that could be produced and utilized in street lighting. The noise level index LDEN was calculated for each of the three selected locations. The equivalent noise level values were always exceeding the limits through the day, evening and night. At daytime they ranged between 75-85 dB which is higher that the permissible limit by 10-20 dB, at evening they ranged from 80-85 dB which is also higher than the permissible limit with 20-25 dB and at the night they ranged from 75-80 dB which is higher by 20-25 dB than the permissible limit. The research concluded that utilizing noise using the piezoelectric material is successful. The electric energy produced from an area of 1.45 m2 containing 690 piezoelectric QB220-503YB transducers at each of the selected stations was about 0.024 watt hr. This amount of electric energy is too small to be used in an application. So the application area should be maximized to hundreds of square meters to produce beneficial electric energy that can be used in lighting 1 LED street lamp or it can be stored and used when needed in applications that use greater amount of electric energy and this would help in reducing the energy consumed