The immediate upstream region of the 5 '-UTR from the AUG start codon has a pronounced effect on the translational efficiency in Arabidopsis thaliana

The nucleotide sequence around the translational initiation site is an important cis-acting element for post-transcriptional regulation. However, it has not been fully understood how the sequence context at the 5'-untranslated region (5'-UTR) affects the translational efficiency of individual mRNAs. In this study, we provide evidence that the 5'-UTRs of Arabidopsis genes showing a great difference in the nucleotide sequence vary greatly in translational efficiency with more than a 200-fold difference. Of the four types of nucleotides, the A residue was the most favourable nucleotide from positions -1 to -21 of the 5'-UTRs in Arabidopsis genes. In particular, the A residue in the 5'-UTR from positions -1 to -5 was required for a high-level translational efficiency. In contrast, the T residue in the 5'-UTR from positions -1 to -5 was the least favourable nucleotide in translational efficiency. Furthermore, the effect of the sequence context in the -1 to -21 region of the 5'-UTR was conserved in different plant species. Based on these observations, we propose that the sequence context immediately upstream of the AUG initiation codon plays a crucial role in determining the translational efficiency of plant genes.ope

The relationship between labour unions’ bargaining power and firms’ operating flexibility: New evidence from emerging markets

This study analyses the relevance between the bargaining power of labour unions and the operating flexibility on firms’ capital costs by using non-financial firms listed on the Korean stock exchange from 1999 to 2013. Under the assumption that constraints in business activities attributed to the collective bargaining power of labour unions lead to reduced operating flexibility and increased capital costs, we test this notion empirically; the main test results are as follows: First, we find from portfolio analysis that the cost of capital is higher for firms in more unionized industries. Second, we find that union coverage positively affects the cost of capital at a significant level. Third, we confirm through robustness tests that the industry adjusted union coverage (IAUC) also has a positive effect on the cost of capital at a significant level. As a result, the effect holds after controlling for a host of industry- and firm-level characteristics, and is stronger when unions have more favourable bargaining power. Thus, our findings are consistent with the hypothesis that the increase of labour unions’ bargaining power leads to raise firms’ capital costs by decreasing operating flexibility in the Korean firms

Notes on Supersymmetry Enhancement of ABJM Theory

We study the supersymmetry enhancement of ABJM theory. Starting from a ${\cal N}=2$ supersymmetric Chern-Simons matter theory with gauge group U(2)$\times$U(2) which is a truncated version of the ABJM theory, we find by using the monopole operator that there is additional ${\cal N}=2$ supersymmetry related to the gauge group. We show this additional supersymmetry can combine with ${\cal N}=6$ supersymmetry of the original ABJM theory to an enhanced ${\cal N}=8$ SUSY with gauge group U(2)$\times$U(2) in the case $k=1,2$. We also discuss the supersymmetry enhancement of the ABJM theory with U($N$)$\times$U($N$) gauge group and find a condition which should be satisfied by the monopole operator.Comment: 23 pages, no figure, minor corrections, version to appear in JHE

Linear Kondo conductance in a quantum dot

In a tunneling experiment across a quantum dot it is possible to change the coupling between the dot and the contacts at will, by properly tuning the trasparency of the barriers and the temperature. Gate voltages allow for changes of the relative position of the dot addition energies and the Fermi level of the leads. Here we discuss the two limiting cases: weak and strong coupling in the tunneling Hamiltonian. In the latter case Kondo resonant conductance can emerge at low temperature in a Coulomb blockade valley. We give a pedagogical approach to the single-channel Kondo physics at equilibrium and review the Nozieres scattering picture of the correlated fixed point. We emphasize the effect of an applied magnetic field and show how an orbital Kondo effect can take place in vertical quantum dots tuned both to an even and to an odd number of electrons at a level crossing. We extend the approach to the two-channel overscreened Kondo case and discuss recent proposals for detecting the non-Fermi liquid fixed point which could be reached at strong coupling.Comment: 31 pages, invited review articl

On the helium content of Galactic globular clusters via the R parameter

We estimate the empirical R parameter in 26 Galactic Globular Clusters covering a wide metallicity range, imaged by WFPC2 on board the HST. The improved spatial resolution permits a large fraction of the evolved stars to be measured and permits accurate assessment of radial populaton gradients and completeness corrections. In order to evaluate both the He abundance and the He to metal enrichment ratio, we construct a large set of evolutionary models by adopting similar metallicities and different He contents. We find an absolute He abundance which is lower than that estimated from spectroscopic measurements in HII regions and from primordial nucleosynthesis models. This discrepancy could be removed by adopting a C12O16 nuclear cross section about a factor of two smaller than the canonical value, although also different assumptions for mixing processes can introduce systematical effects. The trend in the R parameter toward solar metallicity is consistent with an upper limit to the He to metal enrichment ratio of the order of 2.5.Comment: accepted for pubblication on Ap

Enhanced Supersymmetry of Nonrelativistic ABJM Theory

We study the supersymmetry enhancement of nonrelativistic limits of the ABJM theory for Chern-Simons level $k=1,2$. The special attention is paid to the nonrelativistic limit (known as `PAAP' case) containing both particles and antiparticles. Using supersymmetry transformations generated by the monopole operators, we find additional 2 kinematical, 2 dynamical, and 2 conformal supercharges for this case. Combining with the original 8 kinematical supercharges, the total number of supercharges becomes maximal: 14 supercharges, like in the well-known PPPP limit. We obtain the corresponding super Schr\"odinger algebra which appears to be isomorphic to the one of the PPPP case. We also discuss the role of monopole operators in supersymmetry enhancement and partial breaking of supersymmetry in nonrelativistic limit of the ABJM theory.Comment: 22 pages, references added, version to appear in JHE

The Far-Infrared Properties of Spatially Resolved AKARI Observations

We present the spatially resolved observations of IRAS sources from the Japanese infrared astronomy satellite AKARI All-Sky Survey during the performance verification (PV) phase of the mission. We extracted reliable point sources matched with IRAS point source catalogue. By comparing IRAS and AKARI fluxes, we found that the flux measurements of some IRAS sources could have been over or underestimated and affected by the local background rather than the global background. We also found possible candidates for new AKARI sources and confirmed that AKARI observations resolved IRAS sources into multiple sources. All-Sky Survey observations are expected to verify the accuracies of IRAS flux measurements and to find new extragalactic point sources.Comment: 11 pages, 7 figures, accepted publication in PASJ AKARI special issu

Observation of Collective Excitations of the Dilute 2D Electron System

We report inelastic light scattering measurements of dispersive spin and charge density excitations in dilute 2D electron systems reaching densities less than 10^{10} cm^{-2}. In the quantum Hall state at nu=2, roton critical points in the spin inter--Landau level mode show a pronounced softening as r_s is increased. Instead of a soft mode instability predicted by Hartree--Fock calculations for r_s ~ 3.3, we find evidence of multiple rotons in the dispersion of the softening spin excitations. Extrapolation of the data indicates the possibility of an instability for r_s >~ 11.Comment: Submitted to Physical Review Letter

Robust test method for time-course microarray experiments

<p>Abstract</p> <p>Background</p> <p>In a time-course microarray experiment, the expression level for each gene is observed across a number of time-points in order to characterize the temporal trajectories of the gene-expression profiles. For many of these experiments, the scientific aim is the identification of genes for which the trajectories depend on an experimental or phenotypic factor. There is an extensive recent body of literature on statistical methodology for addressing this analytical problem. Most of the existing methods are based on estimating the time-course trajectories using parametric or non-parametric mean regression methods. The sensitivity of these regression methods to outliers, an issue that is well documented in the statistical literature, should be of concern when analyzing microarray data.</p> <p>Results</p> <p>In this paper, we propose a robust testing method for identifying genes whose expression time profiles depend on a factor. Furthermore, we propose a multiple testing procedure to adjust for multiplicity.</p> <p>Conclusions</p> <p>Through an extensive simulation study, we will illustrate the performance of our method. Finally, we will report the results from applying our method to a case study and discussing potential extensions.</p