The reference genome sequence of Artemisia argyi provides insights into secondary metabolism biosynthesis

Artemisia argyi, a perennial herb of the genus Artemisia in the family Asteraceae, holds significant importance in Chinese traditional medicine, referred to as “Aicao”. Here, we report a high-quality reference genome of Artemisia argyi L. cv. beiai, with a genome size up to 4.15 Gb and a contig N50 of 508.96 Kb, produced with third-generation Nanopore sequencing technology. We predicted 147,248 protein-coding genes, with approximately 68.86% of the assembled sequences comprising repetitive elements, primarily long terminal repeat retrotransposons(LTRs). Comparative genomics analysis shows that A. argyi has the highest number of specific gene families with 5121, and much more families with four or more members than the other 6 plant species, which is consistent with its more expanded gene families and fewer contracted gene families. Furthermore, through transcriptome sequencing of A. argyi in response to exogenous MeJA treatment, we have elucidated acquired regulatory insights into MeJA’s impact on the phenylpropanoid, flavonoid, and terpenoid biosynthesis pathways of A. argyi. The whole-genome information obtained in this study serves as a valuable resource for delving deeper into the cultivation and molecular breeding of A. argyi. Moreover, it holds promise for enhancing genome assemblies across other members of the Asteraceae family. The identification of key genes establishes a solid groundwork for developing new varieties of Artemisia with elevated concentrations of active compounds

Deactivation mechanism and regeneration of carbon nanocomposite catalyst for acetylene hydrochlorination

Acetylene hydrochlorination is an important coal-based technology for production of vinyl chloride, the monomer of one of the world mostly used plastics. Despite of the great potentials demonstrated for carbon-based catalysts to replace the toxic mercury chloride, the stability and the deactivation mechanism are rarely discussed, which is essential for real applications. Herein, we present a detailed study on the deactivation mechanism of nitrogen doped carbon based catalyst in acetylene hydrochlorination. The results show that the deactivation was likely caused by the carbon-like deposition over the catalyst, which can be regenerated with high temperature NH3 treatment. (C) 2017 Elsevier B.V. All rights reserved

Effect of Mining Thickness on Overburden Movement and Underground Pressure Characteristics for Extrathick Coal Seam by Sublevel Caving with High Bottom Cutting Height

Because the coal seam is particularly thick and the mining intensity is large, the mining of extremely thick coal seams often causes a wide range of disturbed fractures, which in turn induces the phenomenon of strong underground pressure such as induced support crushing and water inrush. Through theoretical analysis, laboratory similarity simulation test, and other methods, this paper studies the effect of mining thickness on overburden movement and underground pressure characteristics for extremely thick coal seams by sublevel caving with high bottom cutting height. Some conclusions can be drawn as follows: (i) under the “beam-hinged cantilever beam rocks” structure theory, the rock pillar thickness which needs to be controlled increases linearly as a function of mining thickness is achieved, and the reason of increased of support resistance in full-mechanized caving mining in extremely thick seams is explained in the theory; (ii) based on the results of the theoretical analysis and the lab simulation tests, the law of the abutment pressure peak is inverse to the full-seam mining thickness, and the distance between abutment peak and working face is proportional to the full-seam mining thickness, that is to say that the damage range of overlying strata increased; (iii) there are three working states of loading support in extrathick coal seams, such as normal circumstance, lower main roof pressure, and higher main roof pressure, meanwhile these states keep changing; (iv) under the guarantee of stope safety conditions, due to lower support strength, it will benefit the special thick seam top-coal caving under normal circumstance; (v) increasing the supporting strength can balance the impact loading under the lower main roof pressure, guaranteeing valid support for roof strata; (vi) by releasing high pressure, due to lower production, lower recovery rate of coal and other measures guarantee the stability of the stope support in the case of the higher main roof pressure

Design of foreign object recognition and positioning system for sorting robot of coal mine belt conveyor

Machine vision has a certain theoretical basis in target detection and recognition for sorting robot of coal mine belt conveyor. But current target recognition of sorting robot of coal mine belt conveyor is mainly aimed at coal-gangue recognition. There are few kinds of research on the recognition of foreign object targets causing conveyor belt penetration and tearing, and also few kinds of research on the precise positioning of target foreign object. In order to solve the above problems, a foreign object recognition and positioning system based on machine vision for sorting robots of coal mine belt conveyor is designed. The system can recognize and position different types and shapes of foreign objects on the conveyor belt. The image information of the foreign objects on the conveyor belt in real-time is obtained by adopting binocular vision, and the image is preprocessed. Image information is enhanced based on the Canny operator. The gray stretching method is used to improve image edge information to highlight the edge features of foreign objects on coal mine belt conveyor. The morphological method is used to extract foreign object shape features, and establish foreign object image feature sample library. The image feature matching method is used to solve the existing area of foreign objects to realize the detection, classification and recognition of foreign objects. On the basis of the successful recognition of foreign object type, the region of interest (ROI) of the target foreign object is established based on the edge feature value of the target foreign object. The coordinate conversion relationship is built between the camera, conveyor belt and target foreign object. The fast multi-target centroid calculation method is used to obtain the centroid coordinate of the target foreign object, so as to realize the positioning of the target foreign object. The experimental result of the system prototype shows that the foreign object recognition rate of foreign object recognition and positioning system for sorting robot of coal mine belt conveyor is not affected by the size, material, color and other factors, the system can realize the image acquisition, process, feature extraction, recognition and positioning of the target foreign object of coal mine conveyor belt. The recognition rate is above 92.5%, and the average error of the target foreign object positioning is about 3%

Thermophilic Nucleic Acid Polymerases and Their Application in Xenobiology

Thermophilic nucleic acid polymerases, isolated from organisms that thrive in extremely hot environments, possess great DNA/RNA synthesis activities under high temperatures. These enzymes play indispensable roles in central life activities involved in DNA replication and repair, as well as RNA transcription, and have already been widely used in bioengineering, biotechnology, and biomedicine. Xeno nucleic acids (XNAs), which are analogs of DNA/RNA with unnatural moieties, have been developed as new carriers of genetic information in the past decades, which contributed to the fast development of a field called xenobiology. The broad application of these XNA molecules in the production of novel drugs, materials, and catalysts greatly relies on the capability of enzymatic synthesis, reverse transcription, and amplification of them, which have been partially achieved with natural or artificially tailored thermophilic nucleic acid polymerases. In this review, we first systematically summarize representative thermophilic and hyperthermophilic polymerases that have been extensively studied and utilized, followed by the introduction of methods and approaches in the engineering of these polymerases for the efficient synthesis, reverse transcription, and amplification of XNAs. The application of XNAs facilitated by these polymerases and their mutants is then discussed. In the end, a perspective for the future direction of further development and application of unnatural nucleic acid polymerases is provided

Tuning of Ionic Liquid–Solvent Electrolytes for High-Voltage Electrochemical Double Layer Capacitors: A Review

Electrochemical double-layer capacitors (EDLCs) possess extremely high-power density and a long cycle lifespan, but they have been long constrained by a low energy density. Since the electrochemical stability of electrolytes is essential to the operating voltage of EDLCs, and thus to their energy density, the tuning of electrolyte components towards a high-voltage window has been a research focus for a long time. Organic electrolytes based on ionic liquids (ILs) are recognized as the most commercially promising owing to their moderate operating voltage and excellent conductivity. Despite impressive progress, the working voltage of IL–solvent electrolytes needs to be improved to meet the growing demand. In this review, the recent progress in the tuning of IL- based organic electrolyte components for higher-voltage EDLCs is comprehensively summarized and the advantages and limitations of these innovative components are outlined. Furthermore, future trends of IL–solvent electrolytes in this field are highlighted

Alternative Splicing Regulation of Anthocyanin Biosynthesis in Camellia sinensis var. assamica Unveiled by PacBio Iso-Seq

Although the pathway and transcription factor regulation of anthocyanin biosynthesis in tea plants [Camellia sinensis (L.) O. Ktze] are known, post-transcriptional regulation mechanisms involved in anthocyanin accumulation have not been comprehensively studied. We obtained the full-length transcriptome of a purple cultivar (‘Zijuan’) and a normal green cultivar (‘Yunkang 10#) of C. sinensis var. asssamica (Masters) showing different accumulation of anthocyanins and catechins through PacBio isoform sequencing (Iso-Seq). In total, 577,557 mapped full-length cDNAs were obtained, and 2,600 average-length gene isoforms were identified in both cultivars. After gene annotations and pathway predictions, we found that 98 key genes in anthocyanin biosynthesis pathways could have undergone alternative splicing (AS) events, and identified a total of 238 isoforms involved in anthocyanin biosynthesis. We verified expression of the C4H, CHS, FLS, CCOM, F3′5’H, LAR, PAL, CCR, CYP73A13, UDP75L12, UDP78A15/UFGT, UDP94P1, GL3, MYB113, ANR, ANS, F3H, 4CL1, CYP98A3/C3H, CHI, DFR genes and their AS transcripts using qRT-PCR. Correlation analysis of anthocyanin biosynthesis and gene expression results revealed that C4H1, FLS1, PAL2, CCR2, UDP75L122 and MYB113-1 are crucial AS transcripts for regulating anthocyanin biosynthesis in C. sinensis var. assamica. Our results reveal post-transcriptional regulation of anthocyanin biosynthesis in tea plants, and provide more new insights into the regulation of secondary metabolism

Priority establishment of soil bacteria in rhizosphere limited the spread of tetracycline resistance genes from pig manure to soil-plant systems based on synthetic communities approach

The spread of antibiotic resistance genes (ARGs) in agroecosystems through the application of animal manure is a global threat to human and environmental health. However, the adaptability and colonization ability of animal manure-derived bacteria determine the spread pathways of ARG in agroecosystems, which have rarely been studied. Here, we performed an invasion experiment by creating a synthetic communities (SynCom) with ten isolates from pig manure and followed its assembly during gnotobiotic cultivation of a soil-Arabidopsis thaliana (A. thaliana) system. We found that Firmicutes in the SynCom were efficiently filtered out in the rhizosphere, thereby limiting the entry of tetracycline resistance genes (TRGs) into the plant. However, Proteobacteria and Actinobacteria in the SynCom were able to establish in all compartments of the soil–plant system thereby spreading TRGs from manure to soil and plant. The presence of native soil bacteria prevented the establishment of manure-borne bacteria and effectively reduced the spread of TRGs. Achromobacter mucicolens and Pantoea septica were the main vectors for the entry of tetA into plants. Furthermore, doxycycline stress promoted the horizontal gene transfer (HGT) of the conjugative resistance plasmid RP4 within the SynCom in A. thaliana by upregulating the expression of HGT-related mRNAs. Therefore, this study provides evidence for the dissemination pathways of ARGs in agricultural systems through the invasion of manure-derived bacteria and HGT by conjugative resistance plasmids and demonstrates that the priority establishment of soil bacteria in the rhizosphere limited the spread of TRGs from pig manure to soil-plant systems

Digital modelling method of coal-mine roadway based on millimeter-wave radar array

Abstract The roadway space of coal mine is narrow, and the illumination is low and uneven. Dynamic mining is accompanied by dust and water mist. The accuracy and reliability of roadway data collected by vision and laser sensors are poor. Based on this, a digital modeling method of coal mine roadway based on millimeter-wave radar array is proposed. Firstly, aiming at the problem of complex environmental interference, combined with the characteristics of small amount of single frame data of millimeter-wave point cloud, a multi-layer filtering noise reduction processing and dynamic subgraph registration method of millimeter-wave point cloud is proposed to filter out interference points and realize single radar point cloud registration. Secondly, aiming at the problem that a single millimeter-wave radar cannot scan the complete roadway information at one time, combined with the characteristics of small elevation field of view of millimeter-wave radar, a millimeter-wave radar array acquisition system is built, and an improved iterative closest point (ICP) registration algorithm based on point cloud features is established to construct the roadway point cloud fusion model. Finally, aiming at the problem of uneven and sparse point cloud after array fusion, a Poisson surface reconstruction method based on point cloud density weighted interpolation is proposed to refine the roadway structure and realize the accurate reconstruction of digital roadway model. The experimental results show that the digital modeling method of millimeter-wave radar array can accurately obtain the information of roadway surrounding rock, the density of roadway point cloud is increased by 22.4%, and the average absolute error percentage of the width and height of the reconstructed roadway model is only 0.82% and 0.72%, which provides a new research method for the reconstruction of underground roadway and an important basis for the digital modeling method of coal mine roadway