Effect of quantum resonances on local temperature in nonequilibrium open systems

Measuring local temperatures of open systems out of equilibrium is emerging as a novel approach to study the local thermodynamic properties of nanosystems. An operational protocol has been proposed to determine the local temperature by coupling a probe to the system and then minimizing the perturbation to a certain local observable of the probed system. In this paper, we first show that such a local temperature is unique for a single quantum impurity and the given local observable. We then extend this protocol to open systems consisting of multiple quantum impurities by proposing a local minimal perturbation condition (LMPC). The influence of quantum resonances on the local temperature is elucidated by both analytic and numerical results. In particular, we demonstrate that quantum resonances may give rise to strong oscillations of the local temperature along a multiimpurity chain under a thermal bias.Comment: 13 pages, 7 figure

Genetic Diversity and Symbiotic Efficiency of Nodulating Rhizobia Isolated from Root Nodules of Faba Bean in One Field

Thirty-one nodulating rhizobium strains were collected from root nodules of spring and winter type faba bean cultivars grown in micro ecoarea, i.e. the same field in Chengdu plain, China. The symbiotic efficiency and phylogeny of these strains were studied. Effectively nitrogen fixing strains were isolated from both winter type and spring type cultivars. Based on phylogenetic analysis of 16S rRNA gene and concatenated sequence of atpD, glnII and recA genes, the isolates were assigned as Rhizobium anhuiense and a potential new Rhizobium species. The isolates were diverse on symbiosis related gene level, carrying five, four and three variants of nifH, nodC and nodD, respectively. Strains carrying similar gene combinations were trapped by both winter and spring cultivars, disagreeing with the specificity of symbiotic genotypes to reported earlier faba bean ecotypes.Peer reviewe

Multiple Reflections and Fresnel Absorption of Gaussian Laser Beam in an Actual 3D Keyhole during Deep-Penetration Laser Welding

In deep penetration laser welding, a keyhole is formed in the material. Based on an experimentally obtained bending keyhole from low- and medium-speed laser penetration welding of glass, the keyhole profiles in both the symmetric plane are determined by polynomial fitting. Then, a 3D bending keyhole is reconstructed under the assumption of circular cross-section of the keyhole at each keyhole depth. In this paper, the behavior of focused Gaussian laser beam in the keyhole is analyzed by tracing a ray of light using Gaussian optics theory, the Fresnel absorption and multiple reflections in the keyhole are systematically studied, and the laser intensities absorbed on the keyhole walls are calculated. Finally, the formation mechanism of the keyhole is deduced

Effect of quantum resonances on local temperature in nonequilibrium open systems

Measuring local temperatures of open systems out of equilibrium is emerging as a novel approach to study the local thermodynamic properties of nanosystems. An operational protocol has been proposed to determine the local temperature by coupling a probe to the system and then minimizing the perturbation to a certain local observable of the probed system. In this paper, we first show that such a local temperature is unique for a single quantum impurity and the given local observable. We then extend this protocol to open systems consisting of multiple quantum impurities by proposing a local minimal perturbation condition (LMPC). The influence of quantum resonances on the local temperature is elucidated by both analytic and numerical results. In particular, we demonstrate that quantum resonances may give rise to strong oscillations of the local temperature along a multiimpurity chain under a thermal bias

Vegetation clumping modulates global photosynthesis through adjusting canopy light environment

10.1111/gcb.16503GLOBAL CHANGE BIOLOGY29

DataSheet1_Status assessment and probabilistic health risk modeling of polycyclic aromatic hydrocarbons (PAHs) in surface soil across China.pdf

Polycyclic aromatic hydrocarbon (PAH) accumulation in topsoil is getting particular concern with the rapid development of urbanization and industrialization, while the overall pollution status and related risk posed by PAHs received limited attentions at the national scale. This study conducted an overview of published data on 16 priority control PAHs by USEPA on the related peer-reviewed 207 research papers between 2000 and 2020 in 30 provinces of China. Based on that, the pollution levels, composition status, spatial distribution pattern, ecological risk, and human health risk posed by soil PAHs were evaluated. Monte Carlo simulation was adopted to model the probabilistic health risk and identify the contributor of such risks. Results demonstrated the concentrations of ∑16PAHs in soil varied from “undetected” to 261 μg g−1 with a mean value of 0.63 μg g−1, indicating the obvious accumulation of PAHs in topsoil of most provinces in China compared with the guideline value (0.2 μg g−1). The concentrations of ∑16PAHs in surface soil of China has obvious regional characteristics. Higher concentrations of soil PAHs are mainly distributed in north, northwest, and eastern regions, especially in Xinjiang, Shandong, Jiangsu, Sichuan, and Guangxi Province. Risk assessment indicates potential ecological and human health risk were posed by soil PAHs, therefore, reducing soil PAHs concentration and exposure frequency are the most effective pathways to protect human health. Despite the fact that risks posed by soil PAHs are generally low, concentrations of PAHs in some sites are relatively high. It is necessary to take effective measures to remediate soil PAHs pollution in certain areas to reduce concentration and associated risks.</p

Vegetation clumping modulates global photosynthesis through adjusting canopy light environment

The spatial dispersion of photoelements within a vegetation canopy, quantified by the clumping index (CI), directly regulates the within-canopy light environment and photosynthesis rate, but is not commonly implemented in terrestrial biosphere models to estimate the ecosystem carbon cycle. A few global CI products have been developed recently with remote sensing measurements, making it possible to examine the global impacts of CI. This study deployed CI in the radiative transfer scheme of the Community Land Model version 5 (CLM5) and used the revised CLM5 to quantitatively evaluate the extent to which CI can affect canopy absorbed radiation and gross primary production (GPP), and for the first time, considering the uncertainty and seasonal variation of CI with multiple remote sensing products. Compared to the results without considering the CI impact, the revised CLM5 estimated that sunlit canopy absorbed up to 9%-15% and 23%-34% less direct and diffuse radiation, respectively, while shaded canopy absorbed 3%-18% more diffuse radiation across different biome types. The CI impacts on canopy light conditions included changes in canopy light absorption, and sunlit-shaded leaf area fraction related to nitrogen distribution and thus the maximum rate of Rubisco carboxylase activity (Vcmax ), which together decreased photosynthesis in sunlit canopy by 5.9-7.2&nbsp;PgC year-1 while enhanced photosynthesis by 6.9-8.2&nbsp;PgC year-1 in shaded canopy. With higher light use efficiency of shaded leaves, shaded canopy increased photosynthesis compensated and exceeded the lost photosynthesis in sunlit canopy, resulting in 1.0 ± 0.12 PgC year-1 net increase in GPP. The uncertainty of GPP due to the different input CI datasets was much larger than that caused by CI seasonal variations, and was up to 50% of the magnitude of GPP interannual variations in the tropical regions. This study highlights the necessity of considering the impacts of CI and its uncertainty in terrestrial biosphere models

Etoposide-induced DNA damage affects multiple cellular pathways in addition to DNA damage response

DNA damage response (DDR) coordinates lesion repair and checkpoint activation. DDR is intimately connected with transcription. However, the relationship between DDR and transcription has not been clearly established. We report here RNA-sequencing analyses of MCF7 cells containing double-strand breaks induced by etoposide. While etoposide does not apparently cause global changes in mRNA abundance, it altered some gene expression. At the setting of fold alteration ≥ 2 and false discovery rate (FDR) ≤ 0.001, FDR < 0.05, or p < 0.05, etoposide upregulated 96, 268, or 860 genes and downregulated 41, 133, or 503 genes in MCF7 cells. Among these differentially expressed genes (DEGs), the processes of biogenesis, metabolism, cell motility, signal transduction, and others were affected; the pathways of Ras GTPase activity, RNA binding, cytokine-mediated signaling, kinase regulatory activity, protein binding, and translation were upregulated, and those pathways related to coated vesicle, calmodulin binding, and microtubule-based movement were downregulated. We further identified RABL6, RFTN2, FAS-AS1, and TCEB3CL as new DDR-affected genes in MCF7 and T47D cells. By metabolic labelling using 4-thiouridine, we observed dynamic alterations in the transcription of these genes in etoposide-treated MCF7 and T47D cells. During 0-2 hour etoposide treatment, RABL6 transcription was robustly increased at 0.5 and 1 hour in MCF7 cells and at 2 hours in T47D cells, while FAS-AS1 transcription was dramatically and steadily elevated in both cell lines. Taken together, we demonstrate dynamic alterations in transcription and that these changes affect multiple cellular processes in etoposide-induced DDR