9 research outputs found
Interactions between nascent proteins and the ribosome surface inhibit co-translational folding
- Author
- Publication venue
- NATURE PORTFOLIO
- Publication date
- 14/10/2021
- Field of study
Most proteins begin to fold during biosynthesis on the ribosome. It has been suggested that interactions between the emerging polypeptide and the ribosome surface might allow the ribosome itself to modulate co-translational folding. Here we combine protein engineering and NMR spectroscopy to characterize a series of interactions between the ribosome surface and unfolded nascent chains of the immunoglobulin-like FLN5 filamin domain. The strongest interactions are found for a C-terminal segment that is essential for folding, and we demonstrate quantitative agreement between the strength of this interaction and the energetics of the co-translational folding process itself. Mutations in this region that reduce the extent of binding result in a shift in the co-translational folding equilibrium towards the native state. Our results therefore demonstrate that a competition between folding and binding provides a simple, dynamic mechanism for the modulation of co-translational folding by the ribosome
Nicotinamide's Ups and Downs:Consequences for Fertility, Development, Longevity and Diseases of Poverty and Affluence
- Author
- Abel W
- Allen NJ
- Allen NJ.
- Alvard MS.
- Anderson D
- Bacci ML.
- Bach D-H
- Bailey G.
- Bellwood P.
- Bender DA
- Blanchard I.
- Blanton R
- Body R
- Bongaarts J
- Bratsberg B
- Brothwell DR
- Brysbaert A
- Buckner RL
- Bullmore E.
- Caldwell JC.
- Carhart-Harris RL
- Carr-Saunders AM.
- Caspari R
- Christensen K
- Clarke DL
- Clottes J
- Coale AJ
- Cristiani E
- Crujeiras AB
- Dantzer R
- Dantzer R
- Das U.
- Davidson I
- Dunbar RI.
- Dyer C.
- d’Errico F
- Ellison PT.
- Evans-Pritchard EE.
- Ferguson A.
- Finley MI.
- Flood J.
- Floud R
- Foley RA
- Fox D.
- Fox R.
- Fried MH.
- Frisch RE
- Galea I
- Gamble C
- Ganesan A.
- Gellner E.
- Ginnaio M
- Glaser R
- Gordon AAH
- Grigg DB.
- Gurven M.
- Guthrie RD.
- Haas J.
- Hager L.
- Halstead P.
- Hankes L
- Hankes LV.
- Hanson VD.
- Harper S.
- Harris M.
- Harris S.
- Henrich J.
- Henry L.
- Herrnstein RJ
- Hill K
- Hrdy SB.
- Huelsenbeck JP
- Hutchinson SE.
- Isager S
- Johnson-Hanks JA
- Kannt A
- Khazanov AM.
- Kohler TA
- Krieger I
- Kuhlein H
- Laslett P.
- Lawson DW
- Lesthaeghe RJ.
- Liverani M.
- Livi-Bacci M
- Livi-Bacci M.
- Luppino FS
- Lynn R.
- Lynn R.
- Lévi-Strauss C.
- Madella M
- Maes M
- Maes M.
- Magnusson L.
- Mao H-C
- Marlowe F.
- Mason P
- Mason SL
- McGeer PL
- McKenna T.
- Mellaart J.
- Menken J
- Midlarsky MI.
- Milanovic B.
- Miller AH
- Morineau M.
- Morris GP
- Nag M
- Nejabati HR
- Newman LF
- Nisbett RE
- Opitz CA
- O’Connell JF
- O’Donnell E.
- Page AE
- Perry VH
- Pollan M.
- Potts DT.
- Powell A.
- Power C
- Quick JD
- Raichle ME
- Raison CL
- Ravenstein EG.
- Reader BF
- Rook GA.
- Rouhani M
- Ruddiman WF.
- Sanders WTP
- Satizabal C
- Schildkraut JJ.
- Schoeninger MJ.
- Sear R
- Service ER.
- Sherratt A.
- Smith AB.
- Smith BD
- Smith RS.
- Straus LG.
- Stulp G
- Stulp G
- Thirsk J
- Toutain JC.
- Tracey KJ.
- Tuljapurkar S
- Turner NJ.
- Underdown D.
- Vavilov NI
- Wachter KW.
- Warren JD
- White LA.
- White P.
- Whittle J.
- Wilbraham A
- Wink M
- Wittfogel KA.
- Wohleb ES
- Wong DT
- Woodburn J.
- Yaukey D.
- You Z
- Zelinsky W.
- Publication venue
- 'SAGE Publications'
- Publication date
- 01/01/2018
- Field of study
Aims and Scope: To further explore the role of dietary nicotinamide in both brain development and diseases, particularly those of ageing. Articles cover neurodegenerative disease and cancer. Also discussed are the effects of nicotinamide, contained in meat and supplements and derived from symbionts, on the major transitions of disease and fertility from ancient times up to the present day. A key role for the tryptophan – NAD ‘de novo’ and immune tolerance pathway are discussed at length in the context of fertility and longevity and the transitions from immune paresis to Treg-mediated immune tolerance and then finally to intolerance and their associated diseases. Abstract: Nicotinamide in human evolution increased cognitive power in a positive feedback loop originally involving hunting. As the precursor to metabolic master molecule NAD it is, as vitamin B3, vital for health. Paradoxically, a lower dose on a diverse plant then cereal-based diet fuelled population booms from the Mesolithic onwards, by upping immune tolerance of the foetus. Increased tolerance of risky symbionts, whether in the gut or TB, that excrete nicotinamide co-evolved as buffers for when diet was inadequate. High biological fertility, despite disease trade-offs, avoided the extinction of Homo sapiens and heralded the dawn of a conscious, creative, and pro-fertility culture. Nicotinamide equity now would stabilise populations and prevent NAD-based diseases of poverty and affluence
Measurements agreement between low-cost and high-level handheld 3D scanners to scan the knee for designing a 3D printed knee brace
- Author
- A Kuehnapfel
- AS Salles
- AS Salles
- AS Salles
- B Pierrat
- B Pierrat
- C Lunsford
- C-W Tan
- CA Laughton
- CE Dombroski
- D Giavarina
- E Squyer
- ES Schrank
- J Simenko
- J Woodburn
- Jari Pallari
- JM Bland
- JM Bland
- JM Bland
- KO McGraw
- L Jaeschke
- LF Draganich
- M Cross
- MA Pollock
- N Cau
- N Koepke
- O Troynikov
- P Treleaven
- PE Shrout
- RE Sims
- RW Brouwer
- S Ifflaender
- S Telfer
- S Telfer
- SP Yu
- Steven Allen Gard
- T Tóth
- T Vos
- TE McAlindon
- Y Jin
- Yoann Dessery
- Z Taha
- Publication venue
- 'Public Library of Science (PLoS)'
- Publication date
- Field of study
Kinetics of the superficial perfusion and temperature in connection with photodynamic therapy of basal cell carcinomas using esterified and non-esterified 5-aminolaevulinic acid
- Author
- Agarwal ML
- Bedlow AJ
- Berg K
- Chapman LF
- Chato JC
- Dabski C
- Dewey WC
- Dewey WC
- Erkilic S
- Fingar VH
- Fingar VH
- Gerweck LE
- Glover RA
- Henderson BW
- Herrmann G
- Hornstein OP
- Jakobsson A
- Janowski P
- K. Svanberg
- Kessel D
- Klemp P
- Korbelik M
- Krosl G
- L. Gustafsson
- Lim HW
- Liu DL
- M. Soto Thompson
- N. Bendsoe
- Park DH
- Peng Q
- Peng Q
- S. Andersson-Engels
- S. Palsson
- Sitnik TM
- Spikes JD
- Svanberg K
- Todd DJ
- van der Veen N
- Wardell K
- Warloe T
- Warloe T
- Wolff K
- Woodburn KW
- Publication venue
- 'Wiley'
- Publication date
- Field of study
Combined gene expression and proteomic analysis of EGF induced apoptosis in A431 cells suggests multiple pathways trigger apoptosis
- Author
- A Conesa
- A Contri
- A Cuadrado
- A Kroger
- A Schneeweiss
- A Torriglia
- A Yuryev
- AV Follis
- B Solomon
- BS Verbeek
- C Kari
- C Schere-Levy
- C Wang
- CS Mitsiades
- CW Gourlay
- David L. Adelson
- DE Levy
- DJ Slamon
- DK Armstrong
- DW Barnes
- EJ Weinstein
- Esmaeil Ebrahimie
- F Ciardiello
- F Guo
- G Romeo
- G Watanabe
- G Wu
- GN Gill
- GN Gill
- HL Chan
- Ibrahim Alanazi
- J Fombonne
- J Oh
- JE Darnell Jr
- JF Bromberg
- JR Woodburn
- KC Gilmour
- L Padron-Barthe
- LF Gulli
- M Giacca
- M Ichiba
- M Schmidt
- MA Olayioye
- MM Keane
- MY Tseng
- N Normanno
- N Papadopoulou
- Peter Hoffmann
- R Pinkas-Kramarski
- RPC Wong
- RT Chustz
- S Kamath
- S Kirchhoff
- S Minamoto
- S Parlato
- S Stein
- T Utsumi
- U Rodeck
- VA Kopetz
- W Yuan
- WJ Yao
- XY Fu
- YE Chin
- YE Chin
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 01/01/2013
- Field of study
Published online: 28 July 2013A431 cells, derived from epidermoid carcinoma, overexpress the epidermal growth factor receptor (EGFR) and when treated with a high dose of EGF will undergo apoptosis. We exploited microarray and proteomics techniques and network prediction to study the regulatory mechanisms of EGF-induced apoptosis in A431 cells. We observed significant changes in gene expression in 162 genes, approximately evenly split between pro-apoptotic and anti-apoptotic genes and identified 30 proteins from the proteomic data that had either pro or anti-apoptotic annotation. Our correlation analysis of gene expression and proteome modeled a number of distinct sub-networks that are associated with the onset of apoptosis, allowing us to identify specific pathways and components. These include components of the interferon signalling pathway, and down stream components, including cytokines and suppressors of cytokine signalling. A central component of almost all gene expression sub-networks identified was TP53, which is mutated in A431 cells, and was down regulated. This down regulation of TP53 appeared to be correlated with proteomic sub-networks of cytoskeletal or cell adhesion components that might induce apoptosis by triggering cytochrome C release. Of the only three genes also differentially expressed as proteins, only serpinb1 had a known association with apoptosis. We confirmed that up regulation and cleavage of serpinb1 into L-DNAaseII was correlated with the induction of apoptosis. It is unlikely that a single pathway, but more likely a combination of pathways is needed to trigger EGF induced apoptosis in A431cells.Ibrahim Alanazi, Esmaeil Ebrahimie, Peter Hoffmann, David L. Adelso
Phase I trial of vandetanib in combination with gemcitabine and capecitabine in patients with advanced solid tumors with an expanded cohort in pancreatic and biliary cancers
- Author
- AB Tullo
- AC Hoffmann
- AM Petit
- Christopher H. Lieu
- Cindy L. O’byrant
- Colin Weekes
- CS Lee
- D Cunningham
- D Tang
- D Vitagliano
- D Yoshikawa
- E Ichihara
- EC Cabebe
- Elizabeth Freas
- Elizabeth R. Kessler
- Erica L. Bradshaw-Pierce
- F Carlomagno
- F Ciardiello
- FH Blackhall
- G Colucci
- H Burris
- H Sawai
- HH Verbeek
- HL Kindler
- J Ahn
- Jennifer Spratlin
- JR Woodburn
- JV Heymach
- K Kiura
- KD Miller
- LF Hennequin
- LM Mulligan
- M Kaufman
- Madeleine A. Kane
- ME Valsecchi
- MJ Kovacs
- MJ Moore
- MP Saunders
- N Ferrara
- N Iwahashi
- P Saletti
- P Therasse
- PB Langmuir
- R Herrmann
- R Siegel
- RS Herbst
- RS Herbst
- S. Gail Eckhardt
- SA Wells Jr
- Sarah Eppers
- SN Holden
- SR Wedge
- Stephen Leong
- Sujatha Nallapreddy
- T Conroy
- Todd M. Pitts
- V Heinemann
- V Hess
- VA Zorgetto
- W Scheithauer
- Wells A. Messersmith
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
Nicotinamide’s Ups and Downs: Consequences for Fertility, Development, Longevity and Diseases of Poverty and Affluence
- Author
- Abel W
- Allen NJ
- Allen NJ.
- Alvard MS.
- Anderson D
- Bacci ML.
- Bach D-H
- Bailey G.
- Bellwood P.
- Bender DA
- Blanchard I.
- Blanton R
- Body R
- Bongaarts J
- Bratsberg B
- Brothwell DR
- Brysbaert A
- Buckner RL
- Bullmore E.
- Caldwell JC.
- Carhart-Harris RL
- Carr-Saunders AM.
- Caspari R
- Christensen K
- Clarke DL
- Clottes J
- Coale AJ
- Cristiani E
- Crujeiras AB
- Dantzer R
- Dantzer R
- Das U.
- Davidson I
- Dunbar RI.
- Dyer C.
- d’Errico F
- Ellison PT.
- Evans-Pritchard EE.
- Ferguson A.
- Finley MI.
- Flood J.
- Floud R
- Foley RA
- Fox D.
- Fox R.
- Fried MH.
- Frisch RE
- Galea I
- Gamble C
- Ganesan A.
- Gellner E.
- Ginnaio M
- Glaser R
- Gordon AAH
- Grigg DB.
- Gurven M.
- Guthrie RD.
- Haas J.
- Hager L.
- Halstead P.
- Hankes L
- Hankes LV.
- Hanson VD.
- Harper S.
- Harris M.
- Harris S.
- Henrich J.
- Henry L.
- Herrnstein RJ
- Hill K
- Hrdy SB.
- Huelsenbeck JP
- Hutchinson SE.
- Isager S
- Johnson-Hanks JA
- Kannt A
- Khazanov AM.
- Kohler TA
- Krieger I
- Kuhlein H
- Laslett P.
- Lawson DW
- Lesthaeghe RJ.
- Liverani M.
- Livi-Bacci M
- Livi-Bacci M.
- Luppino FS
- Lynn R.
- Lynn R.
- Lévi-Strauss C.
- Madella M
- Maes M
- Maes M.
- Magnusson L.
- Mao H-C
- Marlowe F.
- Mason P
- Mason SL
- McGeer PL
- McKenna T.
- Mellaart J.
- Menken J
- Midlarsky MI.
- Milanovic B.
- Miller AH
- Morineau M.
- Morris GP
- Nag M
- Nejabati HR
- Newman LF
- Nisbett RE
- Opitz CA
- O’Connell JF
- O’Donnell E.
- Page AE
- Perry VH
- Pollan M.
- Potts DT.
- Powell A.
- Power C
- Quick JD
- Raichle ME
- Raison CL
- Ravenstein EG.
- Reader BF
- Rook GA.
- Rouhani M
- Ruddiman WF.
- Sanders WTP
- Satizabal C
- Schildkraut JJ.
- Schoeninger MJ.
- Sear R
- Service ER.
- Sherratt A.
- Smith AB.
- Smith BD
- Smith RS.
- Straus LG.
- Stulp G
- Stulp G
- Thirsk J
- Toutain JC.
- Tracey KJ.
- Tuljapurkar S
- Turner NJ.
- Underdown D.
- Vavilov NI
- Wachter KW.
- Warren JD
- White LA.
- White P.
- Whittle J.
- Wilbraham A
- Wink M
- Wittfogel KA.
- Wohleb ES
- Wong DT
- Woodburn J.
- Yaukey D.
- You Z
- Zelinsky W.
- Publication venue
- 'SAGE Publications'
- Publication date
- Field of study
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- V Andersen
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- W Arnold
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- W Kuhn
- W Kuhn
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- W Meckback
- W Moller
- W Niessner
- W Parker
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- W Tietsch
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- WK Dagenhart
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- WL Reiter
- WM Currie
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- WR Dixon
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- WR Falk
- WR Gibbs
- WR Gibbs
- WR Gibbs
- WR Gibbs
- WR Hering
- WR Phillips
- WR Wylie
- WR Wylie
- WV Conner
- WV Hassenzahl
- Wvander Eijk
- WW Bowman
- WW Daehnick
- WZ Wade
- Y Abgrall
- Y Alexander
- Y Alexander
- Y Avishai
- Y Bornec
- Y Chanut
- Y Chanut
- Y Chanut
- Y Civelekoglu
- Y Dar
- Y Dmitrevskii
- Y Eisen
- Y Eisenberg
- Y Futami
- Y Iwasaki
- Y Kagawa
- Y Kanda
- Y Leduigou
- Y Masri
- Y Shamai
- Y Sugiyama
- Y Suzuki
- Y Uemura
- Y Yamazaki
- Y Yang
- YA Berdnikov
- YA Berezhnoj
- YA Shcherbakov
- YA Volchek
- YD Bayukov
- YG Mashkarov
- YG Sevast’yanov
- YH Shen
- YK Gavrilov
- YP Antuf’ev
- YP Dmitrevskii
- YR Gismatullin
- YS Horowitz
- YS Korotkin
- YT Borzunov
- YT Borzunov
- YT Borzunov
- YT Borzunov
- Yu Gorodkov V
- Yu Sevast’yanov
- YW Lui
- YY Chu
- Z Basrak
- Z Fraenkel
- Z Hulek
- Z Majka
- Z Zinamon
- ZE Switkowski
- ZE Switkowski
- ZE Switkowski
- ZE Switkowski
- ZE Switkowski
- ZG Werner
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 01/01/1981
- Field of study