49 research outputs found
Interpretation of pH–Activity Profiles for Acid–Base Catalysis from Molecular Simulations
Dynamics of the Native and the Ligand-bound Structures of Eosinophil Cationic Protein: Network of Hydrogen Bonds at the Catalytic Site
QM/MM Simulation (B3LYP) of the RNase A Cleavage-Transesterification Reaction Supports a Triester A N
Steric and solvation effects in ionic S(N)2 reactions
This paper explores the contribution of solvation to the overall steric effects of S2 reactions observed in solution. The reactions of chloride ion with a series of alkyl chloronitriles, RCH(CN)Cl (R = methyl, ethyl, isopropyl, tert-butyl) were investigated both experimentally and theoretically. These reactions serve as a model system for the parent reactions, Cl + RCHCl, which are too slow to measure. Each additional substitution at the β-carbon lowers the reactivity, clearly demonstrating a steric hindrance effect. The magnitude of the steric effect, however, is not significantly different in the gas phase and in solution. We conclude that the solvation energies of the corresponding S2 transition states must be similar regardless of size of the substituent. This lack of size dependence in the current system is in sharp contrast with many other ionic systems such as ionization of simple alkyl alcohols, where solvation depends strongly on size. We propose that the weak size dependence results from the compensation between a direct shielding effect of the substituent and an indirect ionic solvation effect, which arises from the geometric perturbations introduced by the substitution. The conclusion is further supported by calculations using polarizable continuum models and QM/MM simulations