Blast2GO result (blastn) for variable tags: Evalues

Blast2GO result (blastn) for variable tags: Evalue

sequence file for individual 10712131

Individual identifiers are listed in Table 1. These sequences have been filtered for quality (post process_radtags)

Blast2GO annotation results

This file contains annotation results from Blast2GO

xml output file from Blast2GO for variable tags

xml output file from Blast2GO for variable tag

sequence file for individual 10307073

Individual identifiers are listed in Table 1. These sequences have been filtered for quality (post process_radtags)

sequence file for individual 10512077

Individual identifiers are listed in Table 1. These sequences have been filtered for quality (post process_radtags)

R script: 5_Getting_info_on_best_Ttru_hit_sequences

This script retrieves the length of the best Blast hit sequences obtained using the previous R script

R script: 4_RAD_Parse_blast_xml_Pp_Dd

This script was used to summarize Blast hits results from Blast2GO (number of hits belonging to each organism) and to retrieve and export in fasta format the whole sequence from the best hits (these longer sequences were subsequently used in Blast2GO)

Stacks_commands

Three stacks commands: process_radtags, denovo_map, populations

sequence file for individual 10201010

Individual identifiers are listed in Table 1. These sequences have been filtered for quality (post process_radtags)