Pulse EPR measurements of intramolecular distances in a TOPP-labeled transmembrane peptide in lipids.

We present the performance of nanometer-range pulse electron paramagnetic resonance distance measurements (pulsed electron-electron double resonance/double electron-electron resonance, PELDOR/DEER) on a transmembrane WALP24 peptide labeled with the semirigid unnatural amino acid 4-(3,3,5,5-tetra-methyl-2,6-dioxo-4-oxylpiperazin-1-yl)-l-phenylglycine (TOPP). Distances reported by the TOPP label are compared to the ones reported by the more standard MTSSL spin label, commonly employed in protein studies. Using high-power pulse electron paramagnetic resonance spectroscopy at Q-band frequencies (34 GHz), we show that in contrast to MTSSL, our label reports one-peak, sharp (Δr ≤ 0.4 nm) intramolecular distances. Orientational selectivity is not observed. When spin-labeled WALP24 was inserted in two representative lipid bilayers with different bilayer thickness, i.e., DMPC and POPC, the intramolecular distance reported by TOPP did not change with the bilayer environment. In contrast, the distance measured with MTSSL was strongly affected by the hydrophobic thickness of the lipid. The results demonstrate that the TOPP label is well suited to study the intrinsic structure of peptides immersed in lipids

Real Time Evolution in Quantum Many-Body Systems With Unitary Perturbation Theory

We develop a new analytical method for solving real time evolution problems of quantum many-body systems. Our approach is a direct generalization of the well-known canonical perturbation theory for classical systems. Similar to canonical perturbation theory, secular terms are avoided in a systematic expansion and one obtains stable long-time behavior. These general ideas are illustrated by applying them to the spin-boson model and studying its non-equilibrium spin dynamics.Comment: Final version as accepted for publication in Phys. Rev. B (4 pages, 3 figures

High-power test results of a 3 GHz single-cell cavity

Compact, reliable and little consuming accelerators are required for the treatment of tumours with ions. TERA proposes the "cyclinac", composed of a high-frequency, fast-cycling linac which boosts the energy of the particles previously accelerated in a cyclotron. The dimensions of the linac can be reduced if high gradients are used. TERA initiated a high-gradient test program to understand the operational limit of such structures. The program foresees the design, prototyping and high-power test of several high-gradient structures operating at 3 and 5.7 GHz. The high-power tests of the 3 GHz single-cell cavity were completed in Winter 2012. The maximum BDR threshold measured for Emax of 170 MV/m and RF pulses of 2.5 \mu s was 3 x 10-6 bpp/m

Exploiting environmental resonances to enhance qubit quality factors

We discuss dephasing times for a two-level system (including bias) coupled to a damped harmonic oscillator. This system is realized in measurements on solid-state Josephson qubits. It can be mapped to a spin-boson model with a spectral function with an approximately Lorentzian resonance. We diagonalize the model by means of infinitesimal unitary transformations (flow equations), and calculate correlation functions, dephasing rates, and qubit quality factors. We find that these depend strongly on the environmental resonance frequency $\Omega$; in particular, quality factors can be enhanced significantly by tuning $\Omega$ to lie below the qubit frequency $\Delta$.Comment: 5 psges, 5 figure

Nuclear Resonance Vibrational Spectroscopy of Iron Sulfur Proteins

Nuclear inelastic scattering in conjunction with density functional theory (DFT) calculations has been applied for the identification of vibrational modes of the high-spin ferric and the high-spin ferrous iron-sulfur center of a rubredoxin-type protein from the thermophylic bacterium Pyrococcus abysii

Renormalization approach to many-particle systems

This paper presents a renormalization approach to many-particle systems. By starting from a bare Hamiltonian ${\cal H}= {\cal H}_0 +{\cal H}_1$ with an unperturbed part ${\cal H}_0$ and a perturbation ${\cal H}_1$,we define an effective Hamiltonian which has a band-diagonal shape with respect to the eigenbasis of ${\cal H}_0$. This means that all transition matrix elements are suppressed which have energy differences larger than a given cutoff $\lambda$ that is smaller than the cutoff $\Lambda$ of the original Hamiltonian. This property resembles a recent flow equation approach on the basis of continuous unitary transformations. For demonstration of the method we discuss an exact solvable model, as well as the Anderson-lattice model where the well-known quasiparticle behavior of heavy fermions is derived.Comment: 11 pages, final version, to be published in Phys. Rev.

Evolution Equations for the Quark-Meson Transition

Evolution equations describe the effect of consecutively integrating out all quantum fluctuations with momenta larger than some infrared cutoff scale k. We develop a formalism for the introduction of collective degrees of freedom at some intermediate scale and derive the corresponding evolution equations. This allows to account for the appearance of bound states at some characteristic length scale as, for example, the mesons in QCD. The vacuum properties, including condensates of composite operators, can be directly infered from the effective action for k->0. We compute in a simple QCD-motivated model with four-quark interactions the chiral condensate \bar\psi\psi and the effective action for pions including f_\pi. A full treatment of QCD along these lines seems feasible but still requires substantial work. (5 figures available by ordinary mail upon request)Comment: 31 pages, HD-THEP-94-

State-wide calculation of terrain-visualisations and automatic map generation for archaeological objects

Airborne laser scanning (ALS) became very popular in the last two decades for archaeological prospection. With the state-wide availability of ALS-data in Lower Saxony, Germany, about 48,000 km2;, we needed flexible and scalable approaches to process the data. First, we produced a state-wide digital terrain model (DTM) and some visualisations of it to use it in standard GIS software. Some of these visualisations are available as web maps and used for prospection also by volunteers. In a second approach, we automatically generate maps for all known archaeological objects. This is mainly used for the documentation of the 130,000 known objects in Lower Saxony, but also for object-by-object revision of the database. These Maps will also be presented in the web portal "Denkmalatlas Niedersachsen", an open data imitative of the state Lower Saxony.In the first part of this paper, we show how the state-wide DTM and its visualisations can be calculated using tiles. In the second part, we describe the automatic map generation process. All implementations were done with ArcGIS and its scripting interface ArcPy

Localization and fluctuations of local spectral density on tree-like structures with large connectivity: Application to the quasiparticle line shape in quantum dots

We study fluctuations of the local density of states (LDOS) on a tree-like lattice with large branching number $m$. The average form of the local spectral function (at given value of the random potential in the observation point) shows a crossover from the Lorentzian to semicircular form at $\alpha\sim 1/m$, where $\alpha= (V/W)^2$, $V$ is the typical value of the hopping matrix element, and $W$ is the width of the distribution of random site energies. For $\alpha>1/m^2$ the LDOS fluctuations (with respect to this average form) are weak. In the opposite case, $\alpha<1/m^2$, the fluctuations get strong and the average LDOS ceases to be representative, which is related to the existence of the Anderson transition at $\alpha_c\sim 1/(m^2\log^2m)$. On the localized side of the transition the spectrum is discrete, and LDOS is given by a set of $\delta$-like peaks. The effective number of components in this regime is given by $1/P$, with $P$ being the inverse participation ratio. It is shown that $P$ has in the transition point a limiting value $P_c$ close to unity, $1-P_c\sim 1/\log m$, so that the system undergoes a transition directly from the deeply localized to extended phase. On the side of delocalized states, the peaks in LDOS get broadened, with a width $\sim\exp\{-{const}\log m[(\alpha-\alpha_c)/\alpha_c]^{-1/2}\}$ being exponentially small near the transition point. We discuss application of our results to the problem of the quasiparticle line shape in a finite Fermi system, as suggested recently by Altshuler, Gefen, Kamenev, and Levitov.Comment: 12 pages, 1 figure. Misprints in eqs.(21) and (28) corrected, section VII added. Accepted for publication in Phys. Rev.