Effect of root diseases and drought on water use efficiency of wheat

In arid and semi-arid areas, wheat production is limited by drought mainly at the post-anthesis stage. Root diseases also affect the productivity of wheat. This work reports an examination of the response of wheat plants to the interaction of drought and root diseases. The major hypothesis was that root diseases reduce water use efficiency (WUE) under drought conditions. The preliminary experiment compared two cultivars, two root diseases and drought at two plant growth stages. There were no differences between the two root diseases, 'Pythium' and 'Rhizoctonia', however, there was reduced transpiration in diseased plants of cv. Janz following tillering drought, and of cv. Mulgara following anthesis drought. WUE was not affected by diseases. In experiments with deeper pots and post-anthesis drought treatment, 'Pythium' reduced transpiration prior to anthesis. When plants were regularly rewatered to field capacity before the post-anthesis drought, 'Pythium' had no effect on grain yield and WUE grain. When both infected and control plants were given the same total volume of water at high inoculum densities, infected plants had higher WUE grain than controls. Water uptake by infected roots was reduced during early plant growth due to root damage, but was higher than controls during post-anthesis drought due to higher remaining soil water availability, when compared with non-infected plants. However, diseased plants were not able to access all of the additional water and grain yields were not different from controls. Hydroponic experiments compared the effects of 'Pythium' and root pruning on plant water relations. 'Pythium', polyethyleneglycol-induced drought and root pruning reduced transpiration to a similar extent, but only 'Pythium' reduced shoot dry weight. 'Pythium' had no effect on total or instantaneous WUE. This experiment suggested that the effect of 'Pythium' was more than just in reducing the effective size of the root system. Root pruning at a late stage of vegetative growth in pots reduced WUE, demonstrating the importance of the stage at which root damage occurs on how it affects total WUE. Overall, root diseases did not reduce WUE. Reduction in growth was due to reduced transpiration. This did, however, lead to more water being available in soil during a post-anthesis drought

A Canopy Transpiration Model Based on Scaling Up Stomatal Conductance and Radiation Interception as Affected by Leaf Area Index

Estimating transpiration as an individual component of canopy evapotranspiration using a theoretical approach is extremely useful as it eliminates the complexity involved in partitioning evapotranspiration. A model to predict transpiration based on radiation intercepted at various levels of canopy leaf area index (LAI) was developed in a controlled environment using a pasture species, tall fescue (Festuca arundinacea var. Demeter). The canopy was assumed to be a composite of two indistinct layers defined as sunlit and shaded; the proportion of which was calculated by utilizing a weighted model (W model). The radiation energy utilized by each layer was calculated from the PAR at the top of the canopy and the fraction of absorbed photosynthetically active radiation (fAPAR) corresponding to the LAI of the sunlit and shaded layers. A relationship between LAI and fAPAR was also established for this specific canopy to aid the calculation of energy interception. Canopy conductance was estimated from scaling up of stomatal conductance measured at the individual leaf level. Other environmental factors that drive transpiration were monitored accordingly for each individual layer. The Penman–Monteith and Jarvis evapotranspiration models were used as the basis to construct a modified transpiration model suitable for controlled environment conditions. Specially, constructed self-watering tubs were used to measure actual transpiration to validate the model output. The model provided good agreement of measured transpiration (actual transpiration = 0.96 × calculated transpiration, R2 = 0.98; p −1 for the range of available LAIs. The physical proportion of the shaded layer exceeded that of the sunlit layer near LAI of 3.0, however, the contribution of the sunlit layer to the total transpiration remains higher throughout the entire growing season

Precision pollination strategies for advancing horticultural tomato crop production

Global climate change and anthropological activities have led to a decline in insect pollinators worldwide. Agricultural globalisation and intensification have also removed crops from their natural insect pollinators, and sparked research to identify alternate natural insect pollinators and artificial technologies. In certain countries such as Australia the importation of commercial insect pollinators is prohibited, necessitating manual labour to stimulate floral pollination. Artificial pollination technologies are now increasingly essential as the demand for food grown in protected facilities increases worldwide. For tomato fruits, precision pollination has the ability to vastly improve their seed set, size, yield, and quality under optimal environmental conditions and has become financially beneficial. Like many crops from the Solanaceae, tomatoes have a unique self-pollinating mechanism that requires stimulation of the floral organs to release pollen from the poricidal anthers. This review investigates various mechanisms employed to pollinate tomato flowers and discusses emerging precision pollination technologies. The advantages and disadvantages of various pollinating technologies currently available in the protected-cropping industry are described. We provide a buzz perspective on new promising pollination technologies involving robotic air and acoustic devices that are still in their nascency and could provide non-contact techniques to automate pollination for the tomato horticultural industry

MeMo: a hybrid SQL/XML approach to metabolomic data management for functional genomics

Background: The genome sequencing projects have shown our limited knowledge regarding gene function, e.g. S. cerevisiae has 5-6,000 genes of which nearly 1,000 have an uncertain function. Their gross influence on the behaviour of the cell can be observed using large-scale metabolomic studies. The metabolomic data produced need to be structured and annotated in a machine-usable form to facilitate the exploration of the hidden links between the genes and their functions. Description: MeMo is a formal model for representing metabolomic data and the associated metadata. Two predominant platforms (SQL and XML) are used to encode the model. MeMo has been implemented as a relational database using a hybrid approach combining the advantages of the two technologies. It represents a practical solution for handling the sheer volume and complexity of the metabolomic data effectively and efficiently. The MeMo model and the associated software are available at http://dbkgroup.org/memo/. Conclusions: The maturity of relational database technology is used to support efficient data processing. The scalability and self-descriptiveness of XML are used to simplify the relational schema and facilitate the extensibility of the model necessitated by the creation of new experimental techniques. Special consideration is given to data integration issues as part of the systems biology agenda. MeMo has been physically integrated and cross-linked to related metabolomic and genomic databases. Semantic integration with other relevant databases has been supported through ontological annotation. Compatibility with other data formats is supported by automatic conversion

Bilateral Remote Ischaemic Conditioning in Children (BRICC) trial:protocol for a two-centre, double-blind, randomised controlled trial in young children undergoing cardiac surgery

IntroductionMyocardial protection against ischaemic-reperfusion injury is a key determinant of heart function and outcome following cardiac surgery in children. However, with current strategies, myocardial injury occurs routinely following aortic cross-clamping, as demonstrated by the ubiquitous rise in circulating troponin. Remote ischaemic preconditioning, the application of brief, non-lethal cycles of ischaemia and reperfusion to a distant organ or tissue, is a simple, low-risk and readily available technique which may improve myocardial protection. The Bilateral Remote Ischaemic Conditioning in Children (BRICC) trial will assess whether remote ischaemic preconditioning, applied to both lower limbs immediately prior to surgery, reduces myocardial injury in cyanotic and acyanotic young children.Methods and analysisThe BRICC trial is a two-centre, double-blind, randomised controlled trial recruiting up to 120 young children (age 3 months to 3 years) undergoing primary repair of tetralogy of Fallot or surgical closure of an isolated ventricular septal defect. Participants will be randomised in a 1:1 ratio to either bilateral remote ischaemic preconditioning (3×5 min cycles) or sham immediately prior to surgery, with follow-up until discharge from hospital or 30 days, whichever is sooner. The primary outcome is reduction in area under the time-concentration curve for high-sensitivity (hs) troponin-T release in the first 24 hours after aortic cross-clamp release. Secondary outcome measures include peak hs-troponin-T, vasoactive inotrope score, arterial lactate and central venous oxygen saturations in the first 12 hours, and lengths of stay in the paediatric intensive care unit and the hospital.Ethics and disseminationThe trial was approved by the West Midlands-Solihull National Health Service Research Ethics Committee (16/WM/0309) on 5 August 2016. Findings will be disseminated to the academic community through peer-reviewed publications and presentation at national and international meetings. Parents will be informed of the results through a newsletter in conjunction with a local charity.Trial registration numberISRCTN12923441

Developing a core outcome set for the health outcomes for children and adults with congenital oesophageal atresia and/or tracheo-oesophageal fistula: OCELOT task group study protocol

Introduction: Heterogeneity in reported outcomes of infants with oesophageal atresia (OA) with or without tracheo-oesophageal fistula (TOF) prevents effective data pooling. Core outcome sets (COS) have been developed for many conditions to standardise outcome reporting, facilitate meta-analysis and improve the relevance of research for patients and families. Our aim is to develop an internationally-agreed, comprehensive COS for OA-TOF, relevant from birth through to transition and adulthood. Methods and analysis: A long list of outcomes will be generated using (1) a systematic review of existing studies on OA-TOF and (2) qualitative research with children (patients), adults (patients) and families involving focus groups, semistructured interviews and self-reported outcome activity packs. A two-phase Delphi survey will then be completed by four key stakeholder groups: (1) patients (paediatric and adult); (2) families; (3) healthcare professionals; and (4) researchers. Phase I will include stakeholders individually rating the importance and relevance of each long-listed outcome using a 9-point Likert scale, with the option to suggest additional outcomes not already included. During phase II, stakeholders will review summarised results from phase I relative to their own initial score and then will be asked to rescore the outcome based on this information. Responses from phase II will be summarised using descriptive statistics and a predefined definition of consensus for inclusion or exclusion of outcomes. Following the Delphi process, stakeholder experts will be invited to review data at a consensus meeting and agree on a COS for OA-TOF. Ethics and dissemination: Ethical approval was sought through the Health Research Authority via the Integrated Research Application System, registration no. 297026. However, approval was deemed not to be required, so study sponsorship and oversight were provided by Alder Hey Children’s NHS Foundation Trust. The study has been prospectively registered with the COMET Initiative. The study will be published in an open access forum

Developing a core outcome set for the health outcomes for children and adults with congenital oesophageal atresia and/or tracheo-oesophageal fistula:OCELOT task group study protocol

Introduction Heterogeneity in reported outcomes of infants with oesophageal atresia (OA) with or without tracheo-oesophageal fistula (TOF) prevents effective data pooling. Core outcome sets (COS) have been developed for many conditions to standardise outcome reporting, facilitate meta-analysis and improve the relevance of research for patients and families. Our aim is to develop an internationally-agreed, comprehensive COS for OA-TOF, relevant from birth through to transition and adulthood. Methods and analysis A long list of outcomes will be generated using (1) a systematic review of existing studies on OA-TOF and (2) qualitative research with children (patients), adults (patients) and families involving focus groups, semistructured interviews and self-reported outcome activity packs. A two-phase Delphi survey will then be completed by four key stakeholder groups: (1) patients (paediatric and adult); (2) families; (3) healthcare professionals; and (4) researchers. Phase I will include stakeholders individually rating the importance and relevance of each long-listed outcome using a 9-point Likert scale, with the option to suggest additional outcomes not already included. During phase II, stakeholders will review summarised results from phase I relative to their own initial score and then will be asked to rescore the outcome based on this information. Responses from phase II will be summarised using descriptive statistics and a predefined definition of consensus for inclusion or exclusion of outcomes. Following the Delphi process, stakeholder experts will be invited to review data at a consensus meeting and agree on a COS for OA-TOF. Ethics and dissemination Ethical approval was sought through the Health Research Authority via the Integrated Research Application System, registration no. 297026. However, approval was deemed not to be required, so study sponsorship and oversight were provided by Alder Hey Children’s NHS Foundation Trust. The study has been prospectively registered with the COMET Initiative. The study will be published in an open access forum.</p

Developing a core outcome set for the health outcomes for children and adults with congenital oesophageal atresia and/or tracheo-oesophageal fistula:OCELOT task group study protocol

Introduction Heterogeneity in reported outcomes of infants with oesophageal atresia (OA) with or without tracheo-oesophageal fistula (TOF) prevents effective data pooling. Core outcome sets (COS) have been developed for many conditions to standardise outcome reporting, facilitate meta-analysis and improve the relevance of research for patients and families. Our aim is to develop an internationally-agreed, comprehensive COS for OA-TOF, relevant from birth through to transition and adulthood. Methods and analysis A long list of outcomes will be generated using (1) a systematic review of existing studies on OA-TOF and (2) qualitative research with children (patients), adults (patients) and families involving focus groups, semistructured interviews and self-reported outcome activity packs. A two-phase Delphi survey will then be completed by four key stakeholder groups: (1) patients (paediatric and adult); (2) families; (3) healthcare professionals; and (4) researchers. Phase I will include stakeholders individually rating the importance and relevance of each long-listed outcome using a 9-point Likert scale, with the option to suggest additional outcomes not already included. During phase II, stakeholders will review summarised results from phase I relative to their own initial score and then will be asked to rescore the outcome based on this information. Responses from phase II will be summarised using descriptive statistics and a predefined definition of consensus for inclusion or exclusion of outcomes. Following the Delphi process, stakeholder experts will be invited to review data at a consensus meeting and agree on a COS for OA-TOF. Ethics and dissemination Ethical approval was sought through the Health Research Authority via the Integrated Research Application System, registration no. 297026. However, approval was deemed not to be required, so study sponsorship and oversight were provided by Alder Hey Children’s NHS Foundation Trust. The study has been prospectively registered with the COMET Initiative. The study will be published in an open access forum.</p

Bilateral Remote Ischemic Conditioning in Children:a two-center, double-blind, randomized controlled trial in young children undergoing cardiac surgery

Objective: The study objective was to determine whether adequately delivered bilateral remote ischemic preconditioning is cardioprotective in young children undergoing surgery for 2 common congenital heart defects with or without cyanosis.Methods: We performed a prospective, double-blind, randomized controlled trial at 2 centers in the United Kingdom. Children aged 3 to 36 months undergoing tetralogy of Fallot repair or ventricular septal defect closure were randomized 1:1 to receive bilateral preconditioning or sham intervention. Participants were followed up until hospital discharge or 30 days. The primary outcome was area under the curve for high-sensitivity troponin-T in the first 24 hours after surgery, analyzed by intention-to-treat. Right atrial biopsies were obtained in selected participants.Results: Between October 2016 and December 2020, 120 eligible children were randomized to receive bilateral preconditioning (n = 60) or sham intervention (n = 60). The primary outcome, area under the curve for high-sensitivity troponin-T, was higher in the preconditioning group (mean: 70.0 ± 50.9 μg/L/h, n = 56) than in controls (mean: 55.6 ± 30.1 μg/L/h, n = 58) (mean difference, 13.2 μg/L/h; 95% CI, 0.5-25.8; P = .04). Subgroup analyses did not show a differential treatment effect by oxygen saturations (pinteraction = .25), but there was evidence of a differential effect by underlying defect (pinteraction = .04). Secondary outcomes and myocardial metabolism, quantified in atrial biopsies, were not different between randomized groups.Conclusions: Bilateral remote ischemic preconditioning does not attenuate myocardial injury in children undergoing surgical repair for congenital heart defects, and there was evidence of potential harm in unstented tetralogy of Fallot. The routine use of remote ischemic preconditioning cannot be recommended for myocardial protection during pediatric cardiac surgery