The arborescence-realization problem

AbstractA {0, 1}-matrix M is arborescence graphic if there exists an arborescence T such that the arcs of T are indexed on the rows of M and the columns of M are the incidence vectors of the arc sets of dipaths of T. If such a T exists, then T is an arborescence realization for M. This paper presents an almost-linear-time algorithm to determine whether a given {0, 1}-matrix is arborescence graphic and, if so, to construct an arborescence realization. The algorithm is then applied to recognize a subclass of the extended-Horn satisfiability problems introduced by Chandru and Hooker (1991)

Blood ethanol concentrations during and following constant‐rate intravenous infusion of alcohol

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/117025/1/cpt1976192213.pd

Gas chromatographic determination of gallopamil and norgallopamil in human plasma

A highly sensitive gas chromatographic assay is described for the simultaneous determination of gallopamil, a calcium channel blocking agent, and its major metabolite, norgallopamil. A multi-step extraction procedure is employed followed by on-column capillary gas chromatographic analysis using nitrogen-selective detection. Acetylation of norgallopamil is performed to enable accurate quantification of the metabolite. Linearity was achieved over the range 1-50 ng/ml for both analytes. Assay specificity, precision and accuracy were investigated.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/28122/1/0000572.pd

Sequence harmony: detecting functional specificity from alignments

Multiple sequence alignments are often used for the identification of key specificity-determining residues within protein families. We present a web server implementation of the Sequence Harmony (SH) method previously introduced. SH accurately detects subfamily specific positions from a multiple alignment by scoring compositional differences between subfamilies, without imposing conservation. The SH web server allows a quick selection of subtype specific sites from a multiple alignment given a subfamily grouping. In addition, it allows the predicted sites to be directly mapped onto a protein structure and displayed. We demonstrate the use of the SH server using the family of plant mitochondrial alternative oxidases (AOX). In addition, we illustrate the usefulness of combining sequence and structural information by showing that the predicted sites are clustered into a few distinct regions in an AOX homology model. The SH web server can be accessed at www.ibi.vu.nl/programs/seqharmwww

Sequence harmony: detecting functional specificity from alignments

Multiple sequence alignments are often used for the identification of key specificity-determining residues within protein families. We present a web server implementation of the Sequence Harmony (SH) method previously introduced. SH accurately detects subfamily specific positions from a multiple alignment by scoring compositional differences between subfamilies, without imposing conservation. The SH web server allows a quick selection of subtype specific sites from a multiple alignment given a subfamily grouping. In addition, it allows the predicted sites to be directly mapped onto a protein structure and displayed. We demonstrate the use of the SH server using the family of plant mitochondrial alternative oxidases (AOX). In addition, we illustrate the usefulness of combining sequence and structural information by showing that the predicted sites are clustered into a few distinct regions in an AOX homology model. The SH web server can be accessed at www.ibi.vu.nl/programs/seqharmwww

Novel method of estimating volume of distribution of a drug obeying Michaelis-Menten elimination kinetics

The novel method of estimating the volume of distribution involves (a) administering an appropriate bolus intravenous dose of the drug, (b) starting a constant-rate intravenous infusion of the drug at the same time, (c) maintaining the infusion for a given number of hours, (a) measuring the drug concentration over the entire time course, (e) computer-fitting the post-infusion data to obtain estimates of V m and K m , (f) estimating the total area under the concentration-time curve from zero time to infinity, and (g) iteratively solving a cubic equation to obtain the estimate of the volume of distribution. The method was applied to ethanol in the cat and yielded an average value of 635ml/kg (63.5% of body weight) with a coefficient of variation of 23.0%. This is equivalent to total body water in the cat.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/45074/1/10928_2005_Article_BF01312262.pd

sPlotOpen – An environmentally balanced, open-access, global dataset of vegetation plots

Assessing biodiversity status and trends in plant communities is critical for understanding, quantifying and predicting the effects of global change on ecosystems. Vegetation plots record the occurrence or abundance of all plant species co-occurring within delimited local areas. This allows species absences to be inferred, information seldom provided by existing global plant datasets. Although many vegetation plots have been recorded, most are not available to the global research community. A recent initiative, called ?sPlot?, compiled the first global vegetation plot database, and continues to grow and curate it. The sPlot database, however, is extremely unbalanced spatially and environmentally, and is not open-access. Here, we address both these issues by (a) resampling the vegetation plots using several environmental variables as sampling strata and (b) securing permission from data holders of 105 local-to-regional datasets to openly release data. We thus present sPlotOpen, the largest open-access dataset of vegetation plots ever released. sPlotOpen can be used to explore global diversity at the plant community level, as ground truth data in remote sensing applications, or as a baseline for biodiversity monitoring. Main types of variable contained: Vegetation plots (n = 95,104) recording cover or abundance of naturally co-occurring vascular plant species within delimited areas. sPlotOpen contains three partially overlapping resampled datasets (c. 50,000 plots each), to be used as replicates in global analyses. Besides geographical location, date, plot size, biome, elevation, slope, aspect, vegetation type, naturalness, coverage of various vegetation layers, and source dataset, plot-level data also include community-weighted means and variances of 18 plant functional traits from the TRY Plant Trait Database. Spatial location and grain: Global, 0.01?40,000 m². Time period and grain: 1888-2015, recording dates. Major taxa and level of measurement: 42,677 vascular plant taxa, plot-level records.Fil: Sabatini, Francesco Maria. Martin-universität Halle-wittenberg; Alemania. German Centre For Integrative Biodiversity Research (idiv) Halle-jena-leipzig; AlemaniaFil: Lenoir, Jonathan. Université de Picardie Jules Verne; FranciaFil: Hattab, Tarek. Université de Montpellier; FranciaFil: Arnst, Elise Aimee. Manaaki Whenua - Landcare Research; Nueva ZelandaFil: Chytrý, Milan. Masaryk University; República ChecaFil: Giorgis, Melisa Adriana. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto Multidisciplinario de Biología Vegetal. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas Físicas y Naturales. Instituto Multidisciplinario de Biología Vegetal; ArgentinaFil: Vanselow, Kim André. University of Erlangen-Nuremberg; AlemaniaFil: Vásquez Martínez, Rodolfo. Jardín Botánico de Missouri Oxapampa; PerúFil: Vassilev, Kiril. Bulgarian Academy of Sciences; BulgariaFil: Vélez-Martin, Eduardo. ILEX Consultoria Científica; BrasilFil: Venanzoni, Roberto. University of Perugia; ItaliaFil: Vibrans, Alexander Christian. Universidade Regional de Blumenau; BrasilFil: Violle, Cyrille. Paul Valéry Montpellier University; FranciaFil: Virtanen, Risto. German Centre for Integrative Biodiversity Research; AlemaniaFil: von Wehrden, Henrik. Leuphana University of Lüneburg; AlemaniaFil: Wagner, Viktoria. University of Alberta; CanadáFil: Walker, Donald A.. University of Alaska; Estados UnidosFil: Waller, Donald M.. University of Wisconsin-Madison; Estados UnidosFil: Wang, Hua-Feng. Hainan University; ChinaFil: Wesche, Karsten. Senckenberg Museum of Natural History Görlitz; Alemania. Technische Universität Dresden; AlemaniaFil: Whitfeld, Timothy J. S.. University of Minnesota; Estados UnidosFil: Willner, Wolfgang. University of Vienna; AustriaFil: Wiser, Susan K.. Manaaki Whenua. Landcare Research; Nueva ZelandaFil: Wohlgemuth, Thomas. Swiss Federal Institute for Forest, Snow and Landscape Research; SuizaFil: Yamalov, Sergey. Russian Academy of Sciences; RusiaFil: Zobel, Martin. University of Tartu; EstoniaFil: Bruelheide, Helge. German Centre for Integrative Biodiversity Research; Alemani

Cochrane systematic review and meta-analysis of the impact of psychological treatment on health-related quality of life in people with epilepsy: an update by the ILAE Psychology Task Force, highlighting methodological changes

Clinical interest in using psychological interventions for people with epilepsy (PWE) aiming at decreasing mental health difficulties, improving health-related quality of life (HRQOL) and seizure-related outcomes, continues to grow. This article summarizes the 2020 update of the 2017 Cochrane Review and meta-analysis of psychological interventions for PWE, highlighting the reasons for major methodological modifications such as the recategorization of interventions and expanded risk of bias assessment. A 2020 literature search yielded 36 RCTs (n=3526) investigating psychological treatments for PWE with a validated HRQOL measure as an outcome. Twenty-seven trials were skills-based psychological interventions, whilst nine studies were education-only interventions. Among skills-based psychological interventions, 11 studies (n=643) used the Quality of Life in Epilepsy-31 (QOLIE-31) or other QOLIE inventories convertible to QOLIE-31 as an outcome measure and were pooled for meta-analysis. Significant mean changes were observed for the QOLIE-31 total score (mean improvement of 5.23 points; p< 0.001) and in six out of seven subscales (emotional well-being, energy and fatigue, overall QoL, seizure worry, medication and cognitive functioning). The mean changes in the QOLIE-31 total score and the overall QoL subscale exceeded the threshold of minimally important change (MIC), indicating clinically meaningful post-intervention improvement. These results provide moderate evidence that psychological treatments for adults and adolescents with epilepsy enhance HRQOL. In addition to the summary of the Cochrane review, we provide a detailed characterization of the interventions and patient populations of the meta-analyzed studies

DNA-Controlled Excitonic Switches

Fluorescence resonance energy transfer (FRET) is a promising means of enabling information processing in nanoscale devices, but dynamic control over exciton pathways is required. Here, we demonstrate the operation of two complementary switches consisting of diffusive FRET transmission lines in which exciton flow is controlled by DNA. Repeatable switching is accomplished by the removal or addition of fluorophores through toehold-mediated strand invasion. In principle, these switches can be networked to implement any Boolean function