Evaluation of the efficacy of an autogenous Escherichia coli

In poultry production Escherichia coli autogenous vaccines are often used. However, the efficacy of autogenous E. coli vaccinations has not been evaluated experimentally in chickens after start of lay. The aim of the present study was to evaluate the protective effect of an autogenous E. coli vaccine in broiler breeders. Three groups of 28 weeks old broiler breeders (unvaccinated, vaccinated once and twice, respectively) were challenged with a homologous E. coli strain (same strain as included in the vaccine) or a heterologous challenge strain in an experimental ascending model. The clinical outcome was most pronounced in the unvaccinated group; however, the vast majority of chickens in the vaccinated groups had severe pathological manifestations similar to findings in the unvaccinated group after challenge with a homologous as well as a heterologous E. coli strain. Although significant titer rises in IgY antibodies were observed in the twice vaccinated group, antibodies did not confer significant protection in terms of pathological impact. Neither could transfer of maternal derived antibodies to offspring be demonstrated. In conclusion, with the use of the present model for ascending infection, significant protection of an autogenous E. coli vaccine against neither a homologous nor a heterologous E. coli challenge could not be documented

Damping mechanisms for oscillations in solar prominences

Small amplitude oscillations are a commonly observed feature in prominences/filaments. These oscillations appear to be of local nature, are associated to the fine structure of prominence plasmas, and simultaneous flows and counterflows are also present. The existing observational evidence reveals that small amplitude oscillations, after excited, are damped in short spatial and temporal scales by some as yet not well determined physical mechanism(s). Commonly, these oscillations have been interpreted in terms of linear magnetohydrodynamic (MHD) waves, and this paper reviews the theoretical damping mechanisms that have been recently put forward in order to explain the observed attenuation scales. These mechanisms include thermal effects, through non-adiabatic processes, mass flows, resonant damping in non-uniform media, and partial ionization effects. The relevance of each mechanism is assessed by comparing the spatial and time scales produced by each of them with those obtained from observations. Also, the application of the latest theoretical results to perform prominence seismology is discussed, aiming to determine physical parameters in prominence plasmas that are difficult to measure by direct means.Comment: 36 pages, 16 figures, Space Science Reviews (accepted

Prominence seismology using small amplitude oscillations

Quiescent prominences are thin slabs of cold, dense plasma embedded in the much hotter and rarer solar corona. Although their global shape is rather irregular, they are often characterised by an internal structure consisting of a large number of thin, parallel threads piled together. Prominences often display periodic disturbances mostly observed in the Doppler displacement of spectral lines and with an amplitude typically of the order of or smaller than 2--3 km s$^{-1}$, a value which seems to be much smaller than the characteristic speeds of the prominence plasma (namely the Alfv\'en and sound velocities). Two particular features of these small amplitude prominence oscillations is that they seem to damp in a few periods and that they seem not to affect the whole prominence structure. In addition, in high spatial resolution observations, in which threads can be discerned, small amplitude oscillations appear to be clearly associated to these fine structure constituents. Prominence seismology tries to bring together the results from these observations (e.g. periods, wavelengths, damping times) and their theoretical modeling (by means of the magnetohydrodynamic theory) to gain insight into physical properties of prominences that cannot be derived from direct observation. In this paper we discuss works that have not been described in previous reviews, namely the first seismological application to solar prominences and theoretical advances on the attenuation of prominence oscillations

Why rankings of biomedical image analysis competitions should be interpreted with care

International challenges have become the standard for validation of biomedical image analysis methods. Given their scientific impact, it is surprising that a critical analysis of common practices related to the organization of challenges has not yet been performed. In this paper, we present a comprehensive analysis of biomedical image analysis challenges conducted up to now. We demonstrate the importance of challenges and show that the lack of quality control has critical consequences. First, reproducibility and interpretation of the results is often hampered as only a fraction of relevant information is typically provided. Second, the rank of an algorithm is generally not robust to a number of variables such as the test data used for validation, the ranking scheme applied and the observers that make the reference annotations. To overcome these problems, we recommend best practice guidelines and define open research questions to be addressed in the future