A powerful and rapid approach to human genome scanning in small quantities of genomic DNA

Dense maps of short-tandem-repeat polymorphisms (STRPs) have allowed genome-wide searches for genes involved in a great variety of diseases with genetic influences, including common complex diseases. Generally for this purpose, marker sets with a 10 cM spacing are genotyped in hundreds of individuals. We have performed power simulations to estimate the maximum possible intermarker distance that still allows for sufficient power. In this paper we further report on modifications of previously published protocols, resulting in a powerful screening set containing 229 STRPs with an average spacing of 18·3 cM. A complete genome scan using our protocol requires only 80 multiplex PCR reactions which are all carried out using one set of conditions and which do not contain overlapping marker allele sizes. The multiplex PCR reactions are grouped by sets of chromosomes, which enables on-line statistical analysis of a set of chromosomes, as sets of chromosomes are being genotyped. A genome scan following this modified protocol can be performed using a maximum amount of 2.5 μg of genomic DNA per individual, isolated from either blood or from mouth swabs.link_to_subscribed_fulltex

Effects of inbreeding on population mean performance and observational variances in Eucalyptus globulus

Mean performance and variances were studied in self (SELF), open pollinated (OP) and unrelated polymix (POL) crosses of common parentage in Eucalyptus globulus. • Inbreeding depression for survival (SURV) and basal area per hectare (BAH) was the highest reported for a SELF eucalypt population, increasing with age to reach 74 and 77%, respectively, over 10 years. • Inbreeding depression in the OP was 36% for SURV and 32% for BAH at age 10 years, and estimates of outcrossing rate from BAH were stable across ages, averaging 0.56. In contrast, OP inbreeding depression for stem diameter (DBH) of survivors decreased with age and few selfs appeared to survive to 10 years. • There was more variation in DBH between and within SELF than POL families, with variance ratios consistent with rare and partially recessive deleterious alleles causing inbreeding depression. • The OP variances were initially more similar to the SELF population but converged to the POL population after 10 years. • It is argued that when outcrossing rates are low, as in the present case, inbreeding depression will be a significant force countering local adaptation in forest trees