Robust estimation of bacterial cell count from optical density

Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data

A database of the elemental and isotopic composition of water and carbonates from a hypersaline Andean lake (Laguna del Peinado, Argentina)

The dataset presented here encompasses the results of the geochemical analyses of water and recent carbonate samples collected in the El Peinado basin located in the Southern Puna Plateau in Catamarca, Argentina. This system formed by the hypersaline lake Laguna del Peinado, numerous hydrothermal springs, and the small hypersaline lake Laguna Turquesa, provides a natural laboratory to study carbonate formation and the mechanisms that control the incorporation of various elements and isotopes into their structure under a broad range of geochemical conditions. Geochemical analyses include data on the physicochemical parameters, elemental, and isotopic (δ18O, δ2H, δ11B) composition of the waters, and data on the elemental and isotopic (δ18O, δ13C, δ11B) composition of the carbonates. These data allowed us to calculate element partition coefficients and isotopic fractionation between coupled water-carbonate samples from this natural setting, which are also included here. This dataset also includes the results of water modelling using the software PHREEQC, which contains data on the chemical speciation of carbon and boron, the species contributing to total alkalinity, and mineral saturation indices. This information is useful for all those dealing with geochemistry of hypersaline lakes, geochemistry of continental carbonates, as well as paleoenvironmental and paleoclimatic studies using lake carbonates as archives. These data correspond to the research article “On the origin and processes controlling the elemental and isotopic composition of carbonates in hypersaline Andean lakes”. The full description of the data is provided in the data description file