5 research outputs found

    The genetic architecture of the MHC class II region in British Texel sheep

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    Understanding the structure of the major histocompatibility complex, especially the number and frequency of alleles, loci and haplotypes, is crucial for efficient investigation of the way in which the MHC influences susceptibility to disease. Nematode infection is one of the most important diseases suffered by sheep, and the class II region has been repeatedly associated with differences in susceptibility and resistance to infection. Texel sheep are widely used in many different countries and are relatively resistant to infection. This study determined the number and frequency of MHC class II genes in a small flock of Texel sheep. There were 18 alleles at DRB1, 9 alleles at DQA1, 13 alleles at DQB1, 8 alleles at DQA2 and 16 alleles at DQB2. Several haplotypes had no detectable gene products at DQA1, DQB1 or DQB2, and these were defined as null alleles. Despite the large numbers of alleles, there were only 21 distinct haplotypes in the population. The relatively small number of observed haplotypes will simplify finding disease associations because common haplotypes provide more statistical power but complicate the discrimination of causative mutations from linked marker loci

    A genome-wide scan of positive selection signature using Ovine Infinium® HD SNP BeadChip in two Romney lines, selected for resistance or resilience to nematodes

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    A study was undertaken to identify selection signatures associated with resistance to gastrointestinal nematodiasis in sheep. Ninety-three Romney sheep from two selection lines (resistant or resilient) were genotyped using the Ovine Infinium® HD SNP BeadChip, and extended haplotype homozygosity (EHH) and site-specific extended haplotype homozygosity (EHHS) analyses were undertaken. In total, 224 SNPs (147 in EHH and 77 in EHHS) were found to be significant (p <0.0001). Preliminary exploration of 10 SNPs found them to be located within two previously identified QTLs, namely LATRICH_2 and FECGEN, which were associated with nematode larval count and faecal egg count, respectively
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