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Azotobacter genomes: the genome of Azotobacter chroococcum NCIMB 8003 (ATCC 4412)
The genome of the soil-dwelling heterotrophic N2-fixing Gram-negative bacterium Azotobacter chroococcum NCIMB 8003 (ATCC 4412) (Ac-8003) has been determined. It consists of 7 circular replicons totalling 5,192,291 bp comprising a circular chromosome of 4,591,803 bp and six plasmids pAcX50a, b, c, d, e, f of 10,435 bp, 13,852, 62,783, 69,713, 132,724, and 311,724 bp respectively. The chromosome has a G+C content of 66.27% and the six plasmids have G+C contents of 58.1, 55.3, 56.7, 59.2, 61.9, and 62.6% respectively. The methylome has also been determined and 5 methylation motifs have been identified. The genome also contains a very high number of transposase/inactivated transposase genes from at least 12 of the 17 recognised insertion sequence families. The Ac-8003 genome has been compared with that of Azotobacter vinelandii ATCC BAA-1303 (Av-DJ), a derivative of strain O, the only other member of the Azotobacteraceae determined so far which has a single chromosome of 5,365,318 bp and no plasmids. The chromosomes show significant stretches of synteny throughout but also reveal a history of many deletion/insertion events. The Ac-8003 genome encodes 4628 predicted protein-encoding genes of which 568 (12.2%) are plasmid borne. 3048 (65%) of these show > 85% identity to the 5050 protein-encoding genes identified in Av-DJ, and of these 99 are plasmid-borne. The core biosynthetic and metabolic pathways and macromolecular architectures and machineries of these organisms appear largely conserved including genes for CO-dehydrogenase, formate dehydrogenase and a soluble NiFe-hydrogenase. The genetic bases for many of the detailed phenotypic differences reported for these organisms have also been identified. Also many other potential phenotypic differences have been uncovered. Properties endowed by the plasmids are described including the presence of an entire aerobic corrin synthesis pathway in pAcX50f and the presence of genes for retro-conjugation in pAcX50c. All these findings are related to the potentially different environmental niches from which these organisms were isolated and to emerging theories about how microbes contribute to their communities
The effects of modification of a high-latitude ionosphere by high-power HF radio waves. Part 1. Results of multi-instrument ground-based observations
Arenetricarbonylchromium Complexes in Polymerization Transformations by Radical Initiation of Vinyl Polymerization
Insights in the glycosylation steps during biosynthesis of the antitumor anthracycline cosmomycin: characterization of two glycosyltransferase genes
The health of populations living in the indigenous minority settlements of northern Yakutia
Modulation of immune responses by targeting CD169/Siglec-1 with the glycan ligand
A fundamental role in the plant-bacterium interaction for
Gram-negative phytopathogenic bacteria is played by membrane
constituents, such as proteins, lipopoly- or lipooligosaccharides
(LPS, LOS) and Capsule Polysaccharides (CPS).
In the frame of the understanding the molecular basis of plant bacterium interaction, the Gram-negative bacterium Agrobacterium vitis was selected in this study. It is a phytopathogenic member of the Rhizobiaceae family and it induces the crown gall disease selectively on grapevines (Vitis vinifera).
A. vitis wild type strain F2/5, and its mutant in the quorum
sensing gene ΔaviR, were studied. The wild type produces biosurfactants; it is considered a model to study surface motility, and it causes necrosis on grapevine roots and HR (Hypersensitive
Response) on tobacco. Conversely, the mutant does not show any
surface motility and does not produce any surfactant material;
additionally, it induces neither necrosis on grape, nor HR on
tobacco. Therefore, the two strains were analyzed to shed some
light on the QS regulation of LOS structure and the consequent
variation, if any, on HR response. LOS from both strains were isolated and characterized: the two LOS structures maintained several common features and differed for few others.
With regards to the common patterns, firstly: the Lipid A region
was not phosphorylated at C4 of the non reducing glucosamine
but glycosylated by an uronic acid (GalA) unit, secondly: a third
Kdo and the rare Dha (3-deoxy-lyxo-2-heptulosaric acid) moiety
was present.
Importantly, the third Kdo and the Dha residues were substituted
by rhamnose in a not stoichiometric fashion, giving four different
oligosaccharide species.
The proportions among these four species, is the key difference
between the LOSs from both the two bacteria.
LOS from both strains and Lipid A from wild type A. vitis are
now examined for their HR potential in tobacco leaves and grapevine roots