299 research outputs found

    Interpretation of the Veiling of the Photospheric Spectrum for T Tauri Stars in Terms of an Accretion Model

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    The problem on heating the atmospheres of T Tauri stars by radiation from an accretion shock has been solved. The structure and radiation spectrum of the emerging so-called hot spot have been calculated in the LTE approximation. The emission not only in continuum but also in lines has been taken into account for the first time when calculating the spot spectrum. Comparison with observations has shown that the strongest of these lines manifest themselves as narrow components of helium and metal emission lines, while the weaker ones decrease significantly the depth of photospheric absorption lines, although until now, this effect has been thought to be due to the emission continuum alone. The veiling by lines changes the depth of different photospheric lines to a very different degree even within a narrow spectral range. Therefore, the nonmonotonic wavelength dependence of the degree of veiling r found for some CTTS does not suggest a nontrivial spectral energy distribution of the veiling continuum. In general, it makes sense to specify the degree of veiling r only by providing the set of photospheric lines from which this quantity was determined. We show that taking into account the contribution of lines to the veiling of the photospheric spectrum can cause the existing estimates of the accretion rate onto T Tauri stars to decrease by several times, with this being also true for stars with a comparatively weakly veiled spectrum. Neglecting the contribution of lines to the veiling can also lead to appreciable errors in determining the effective temperature, interstellar extinction, radial velocity, and vsin(i)

    Modelling bound ligands in protein crystal structures

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    wARP

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    wARP is a procedure that substantially improves crystallographic phases (and subsequently electron-density maps) as an additional step after density-modification methods such as solvent flattening and averaging. The initial phase set is used to create a number of dummy atom models which are subjected to least-squares or maximum-likelihood refinement and iterative model updating in an automated refinement procedure (ARP). Averaging of the phase sets calculated from the refined output models and weighting of structure factors by their similarity to an average vector results in a phase set that improves and extends the initial phases substantially. An important requirement is that the native data have a maximum resolution beyond \sim2.4 Ă…. The wARP procedure shortens the time-consuming step of model building in crystallographic structure determination and helps to prevent the introduction of errors
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