Cytoskeleton influence on normal and tangent fluctuation modes in the red blood cells

We argue that the paradoxal softness of the red blood cells (RBC) in fluctuation spectra experiments is apparent. We show that the effective surface shear modulus $\mu_s$ of the RBC obtained from fluctuation data and that measured in static deformation experiments have the same order of magnitude. A simple micromechanical model of the RBC developped for this purpose accounts for the influence of a finite-thickness cytoskeleton on the fluctuations of the composite membrane-cytoskeleton system. The spectrin network cytoskeleton with the bulk shear modulus estimated as $\mu\approx105\div 165$ Pa contributes to both normal and tangent fluctuations of the system and confines the fluctuations of the lipid membrane. The ratio of mean square amplitudes of the RBC normal and tangent fluctuations $/$ calculated in the frame of the model is 2-3 orders of magnitude smaller that it is in the free membrane with the same bending and shear moduliComment: 14 pages, 4 figure

Structures of Spherical Viral Capsids as Quasicrystalline Tilings

Spherical viral shells with icosahedral symmetry have been considered as quasicrystalline tilings. Similarly to known Caspar-Klug quasi-equivalence theory, the presented approach also minimizes the number of conformations necessary for the protein molecule bonding with its neighbors in the shell, but is based on different geometrical principles. It is assumed that protein molecule centers are located at vertices of tiles with identical edges, and the number of different tile types is minimal. Idealized coordinates of nonequivalent by symmetry protein positions in six various capsid types are obtained. The approach describes in a uniform way both the structures satisfying the well-known Caspar-Klug geometrical model and the structures contradicting this model.Comment: 8 pages, 2 figures; This version was published in Physics of the Solid State, 2015, Vol. 57, No.4, pp. 810-81

Two-dimensional elasticity determines the low-frequency dynamics of single- and double-walled carbon nanotubes

We develop a continuous theory of low-frequency dynamics for nanotubes with truly two-dimensional (2D) walls constituted by single-atom monolayer. In this frame topological bending elasticity of the monolayer is not related to its vanishing macroscopic thickness. The proposed approach predicts completely new sound dispersions and radius dependences of non-resonant Raman-active modes frequencies in single-walled carbon nanotubes (SWCNT). Resulting relations are suitable for nanotubes identification and more complete or alternative characterization. The theory is also applied to describe the low-frequency dynamics of double-walled carbon nanotubes (DWCNT). It establishes a clear-cut relation between the radial breathing mode in SWCNT and breathing-like modes in DWCNT and fits the existing Raman data better than previously developed 3D continuous or discrete models. The results obtained constitute the basis for new quantitative studies of the low-frequency vibrational spectrum, heat capacity and heat transfer properties of carbon nanotubes.Comment: 12 pages, 1 figur

Chiral Quasicrystalline Order and Dodecahedral Geometry in Exceptional Families of Viruses

On the example of exceptional families of viruses we i) show the existence of a completely new type of matter organization in nanoparticles, in which the regions with a chiral pentagonal quasicrystalline order of protein positions are arranged in a structure commensurate with the spherical topology and dodecahedral geometry, ii) generalize the classical theory of quasicrystals (QCs) to explain this organization, and iii) establish the relation between local chiral QC order and nonzero curvature of the dodecahedral capsid faces.Comment: 8 pages, 3 figure

Density waves theory of the capsid structure of small icosahedral viruses

We apply Landau theory of crystallization to explain and to classify the capsid structures of small viruses with spherical topology and icosahedral symmetry. We develop an explicit method which predicts the positions of centers of mass for the proteins constituting viral capsid shell. Corresponding density distribution function which generates the positions has universal form without any fitting parameter. The theory describes in a uniform way both the structures satisfying the well-known Caspar and Klug geometrical model for capsid construction and those violating it. The quasiequivalence of protein environments in viral capsid and peculiarities of the assembly thermodynamics are also discussed.Comment: 8 pages, 3 figur

Flexoelectricity and piezoelectricity - reason for rich variety of phases in antiferroelectric liquid crystals

The free energy of antiferroelectric liquid crystal which takes into account polar order explicitly is presented. Steric, van der Waals, piezoelectric and flexoelectric interactions to the nearest layers and dipolar electrostatic interactions to the nearest and to the next nearest layers induce indirect tilt interactions with chiral and achiral properties, which extend to the third and to the fourth nearest layers. Chiral indirect interactions between tilts can be large and induce helicoidal modulations even in systems with negligible chiral van der Waals interactions. If indirect chiral interactions compete with chiral van der Waals interactions, the helix unwinding is possible. Although strength of microscopic interactions change monotonically with decreasing temperature, effective interlayer interactions change nonmonotonically and give rise to nonmonotouous change of modulation period through various phases. Increased enatiomeric excess i.e. increased chirality changes the phase sequence.Comment: 4 pages, 1 figur