Salt polygons and porous media convection

From fairy circles to patterned ground and columnar joints, natural patterns spontaneously appear in many complex geophysical settings. Here, we investigate the origins of polygonally patterned crusts of salt playa and salt pans. These beautifully regular features, approximately a meter in diameter, are found worldwide and are fundamentally important to the transport of salt and dust in arid regions. We show that they are consistent with the surface expression of buoyancy-driven convection in the porous soil beneath a salt crust. By combining quantitative results from direct field observations, analog experiments, and numerical simulations, we further determine the conditions under which salt polygons should form, as well as how their characteristic size emerges

In Vivo Control of CpG and Non-CpG DNA Methylation by DNA Methyltransferases

The enzymatic control of the setting and maintenance of symmetric and non-symmetric DNA methylation patterns in a particular genome context is not well understood. Here, we describe a comprehensive analysis of DNA methylation patterns generated by high resolution sequencing of hairpin-bisulfite amplicons of selected single copy genes and repetitive elements (LINE1, B1, IAP-LTR-retrotransposons, and major satellites). The analysis unambiguously identifies a substantial amount of regional incomplete methylation maintenance, i.e. hemimethylated CpG positions, with variant degrees among cell types. Moreover, non-CpG cytosine methylation is confined to ESCs and exclusively catalysed by Dnmt3a and Dnmt3b. This sequence position–, cell type–, and region-dependent non-CpG methylation is strongly linked to neighboring CpG methylation and requires the presence of Dnmt3L. The generation of a comprehensive data set of 146,000 CpG dyads was used to apply and develop parameter estimated hidden Markov models (HMM) to calculate the relative contribution of DNA methyltransferases (Dnmts) for de novo and maintenance DNA methylation. The comparative modelling included wild-type ESCs and mutant ESCs deficient for Dnmt1, Dnmt3a, Dnmt3b, or Dnmt3a/3b, respectively. The HMM analysis identifies a considerable de novo methylation activity for Dnmt1 at certain repetitive elements and single copy sequences. Dnmt3a and Dnmt3b contribute de novo function. However, both enzymes are also essential to maintain symmetrical CpG methylation at distinct repetitive and single copy sequences in ESCs

Baggergut der Hafengruppe Bremen-Stadt in der Ziegelherstellung.

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Salt polygons and porous media convection

From fairy circles to patterned ground and columnar joints, natural patterns spontaneously appear in many complex geophysical settings. Here, we investigate the origins of polygonally patterned crusts of salt playa and salt pans. These beautifully regular features, approximately a meter in diameter, are found worldwide and are fundamentally important to the transport of salt and dust in arid regions. We show that they are consistent with the surface expression of buoyancy-driven convection in the porous soil beneath a salt crust. By combining quantitative results from direct field observations, analogue experiments and numerical simulations, we further determine the conditions under which salt polygons should form, as well as how their characteristic size emerges