The Chinese pine genome and methylome unveil key features of conifer evolution

Conifers dominate the world's forest ecosystems and are the most widely planted tree species. Their giant and complex genomes present great challenges for assembling a complete reference genome for evolutionary and genomic studies. We present a 25.4-Gb chromosome-level assembly of Chinese pine (Pinus tabuliformis) and revealed that its genome size is mostly attributable to huge intergenic regions and long introns with high transposable element (TE) content. Large genes with long introns exhibited higher expressions levels. Despite a lack of recent whole-genome duplication, 91.2% of genes were duplicated through dispersed duplication, and expanded gene families are mainly related to stress responses, which may underpin conifers' adaptation, particularly in cold and/or arid conditions. The reproductive regulation network is distinct compared with angiosperms. Slow removal of TEs with high-level methylation may have contributed to genomic expansion. This study provides insights into conifer evolution and resources for advancing research on conifer adaptation and development

ISOLATION AND CHARACTERIZATION OF SOLUBLE POLYSACCHARIDES FROM CALAMAGROSTIS ANGUSTIFOLIA KOM

Sequential treatments of dewaxed Calamagrostis angustifolia Kom with water (60 ºC and 90 ºC), 70% ethanol, and 70% ethanol containing 0.2%, 1.0%, 2.0%, 4.0%, and 8.0% NaOH at a solid to liquid ratio of 1:25 (g/mL) at 80 ºC for 3 h yielded 36.2% soluble polysaccharides of the dry dewaxed material. The eight polysaccharide fractions obtained were comparatively studied by sugar analysis, GPC, FT-IR, 1H and 13C-NMR, and 2D-NMR (HSQC) spectroscopy. The results showed that the water-soluble polysaccharides might contain noticeable amounts of β-D-glucan, as well as some pectic substances and galactoarabinoxylan. 70% ethanol-soluble polysaccharide was mainly arabinogalactan. The five alkali-soluble hemicelluloses were mainly galactoarabinoxylans. The Ara/Xyl and Ara/Gal values of H5-H8 fractions decreased with the increment of NaOH concentration from 1.0% to 8.0%. Meanwhile, the molecular weights had a declining trend from ~60,000 to ~40,000 g/mol. The smaller sized and more branched polysaccharides tended to be extracted in the early stages under milder conditions, and the larger molecular sized and more linear hemicelluloses tended to be isolated under more highly alkaline conditions

SYNTHESIS AND CHARACTERIZATION OF CELLULOSE-GRAFT-POLY (L-LACTIDE) VIA RING-OPENING POLYMERIZATION

Cellulose-graft-poly (L-lactide) (cellulose-g-PLLA) was prepared under homogeneous mild conditions. Ring-opening polymerization (ROP) was carried out successfully using 4-dimethylaminopyridine (DMAP) as an organic catalyst in an ionic liquid 1-allyl-3-methylimidazolium chloride (AmimCl). The structure of the polymer was characterized by GPC, 1H NMR, 13C NMR, FT-IR, TGA, WAXD, and AFM. The results indicated that the grafting rate of the polymer reached 4.44, which was higher than that reported in AmimCl with Sn(oct)2 as a catalyst. In addition, AFM showed that the polymer in solution could aggregate and self-assemble into an approximately spherical structure, which was different from the rod-like structure of cellulose and round-like polylactic acid particles

Compressive Alginate Sponge Derived from Seaweed Biomass Resources for Methylene Blue Removal from Wastewater

Low cost fabrication of water treatment polymer materials directly from biomass resources is urgently needed in recent days. Herein, a compressive alginate sponge (AS) is prepared from seaweed biomass resources through a green two-step lyophilization method. This material is much different from conventional oven-, air-, vacuum-dried alginate-based adsorbents, which show limitations of shrinkage, rigidness, tight nonporous structure and restricted ions diffusion, hindering its practical applications, and was used to efficiently remove methylene blue (MB), a main colorful contaminant in dye manufacturing, from wastewater. The batch adsorption studies are carried out to determine the impact of pH, contact time and concentration of dye on the adsorption process. The maximum adsorption capacity can be obtained at 1279 mg g−1, and the shape-moldable AS can be facilely utilized as a fixed-bed absorption column, providing an efficient approach for continuous removal of MB within a short time. It is also important that such a compressive AS can be regenerated by a simple squeezing method while retaining about 70% capacity for more than ten cycles, which is convenient to be reused in practical water treatment. Compressive AS demonstrates its merits of high capability, large efficiency and easy to recycle as well as low cost resources, indicating widespread potentials for application in dye contaminant control regarding environmental protection

Direct reduction of iron oxides based on steam reforming of bio-oil : a highly efficient approach for production of DRI from bio-oil and iron ores

Production of direct reduced iron (DRI) was performed by a novel and environmentally friendly approach through a systematic experimental process development and process integration study on bio-oil reforming and iron ores reduction. The Ni-Cu-Zn-Al₂O₃ catalyst is one of most suitable candidates for bio-oil reforming because this non-noble metal catalyst can efficiently reform the bio-oil to H₂ and CO₂ at a lower operating temperature (450-500 °C) with a longer lifetime. The catalytic activities of the Ni-Cu-Zn-Al₂O₃ catalyst for different processes, including the reforming of the oxygenated organic compounds in the bio-oil, the water-gas shift reaction and the decomposition of organic compounds, have been investigated. A hydrogen yield of 87.4% with a carbon conversion of 91.8% was obtained at T = 500 °C and S/C = 6.1. The hydrogen content reached about 94.6 vol% after simple purification by removing CO₂. Furthermore, direct reduction of iron oxides at different reduction temperatures was investigated using on-line rich-hydrogen reducing gases. The metallization for production of DRI from three ore powders (limonite, hematite and magnetite) and hematite pellets ranges from 93 to 97% at 850 °C for 1 h reduction. The reduction process from the oxidized iron to metallic iron and the intermediate phases were investigated via chemical analysis, X-ray diffraction and X-ray fluorescence analyses. The green DRI process with high reduction efficiency and real environmental benefits would, potentially, be a useful route to produce DRI from bio-oil or biomass.12 page(s

The methylation landscape of giga-genome and the epigenetic timer of age in Chinese pine

DNA methylation level declines during aging of mammals. Here, the authors report single-base resolution landscape of cytosine DNA methylation at different ages of Chinese pine and show that the global cytosine DNA methylation gradually increases as age progresses.Epigenetics has been revealed to play a crucial role in the long-term memory in plants. However, little is known about whether the epigenetic modifications occur with age progressively in conifers. Here, we present the single-base resolution DNA methylation landscapes of the 25-gigabase Chinese pine (Pinus tabuliformis) genome at different ages. The result shows that DNA methylation is closely coupled with the regulation of gene transcription. The age-dependent methylation profile with a linearly increasing trend is the most significant pattern of DMRs between ages. Two segments at the five-prime end of the first ultra-long intron in DAL1, a conservative age biomarker in conifers, shows a gradual decline of CHG methylation as the age increased, which is highly correlated with its expression profile. Similar high correlation is also observed in nine other age marker genes. Our results suggest that DNA methylation serves as an important epigenetic signature of developmental age in conifers

Effects of Hydrothermal Pretreatment on the Structural Characteristics of Organosolv Lignin from Triarrhena lutarioriparia

The effects of hydrothermal pretreatment (170–180 °C, 30–60 min) on the structural characteristics of enzymatic and extracted lignin from Triarrhena lutarioriparia (TL) during the integrated delignification process have been comprehensively investigated. Ion chromatography and NMR characterization showed that liquid products after mild hydrothermal process (170 °C, 30 min) were mainly composed of xylooligosaccharide (XOS) with different degrees of polymerization (DP ≥ 2). In addition, the structural changes of lignin during hydrothermal pretreatment and organic acid delignification process have been demonstrated by quantitative 2D heteronuclear single quantum coherence (2D-HSQC) and 31P-NMR techniques. Results showed that the structural changes of lignin (e.g., cleavage of β-O-4 linkages) induced by the hydrothermal pretreatment will facilitate the subsequent organic acid delignification process, and acetylated lignin could be obtained with a considerable yield, which can be used in lignin-based composite and candidate feedstock for catalytic upgrading of lignin. In short, the proposed process facilitates the producing of XOS and acetylated lignin for lignin valorization

High efficient production of hydrogen from crude bio-oil via an integrative process between gasification and current-enhanced catalytic steam reforming

High efficient production of hydrogen from the crude bio-oil was performed in the gasification-reforming dual beds. A recently developed electrochemical catalytic reforming method was applied in the downstream reforming bed using NiCuZnAl catalyst. Production of hydrogen from the crude bio-oil through both the single gasification and integrative gasification-reforming processes was investigated. The maximum hydrogen yield of 81.4% with carbon conversion of 87.6% was obtained through the integrative process. Hydrogen is a major product (∼73 vol%) together with by-products of CO₂ (∼26 vol%) as well as very low content of CO (<1%) and a trace amount of CH₄ through the integrative route. In particular, the deactivation of the catalyst was significantly depressed by using the integrative gasification-reforming method, comparing to the direct reforming of the crude bio-oil. The mechanism and evaluation for the downstream electrochemical catalytic reforming were also discussed. The integrative process with higher hydrogen yield and carbon conversion, potentially, would be a useful route to produce hydrogen from the crude bio-oil.15 page(s

The methylation landscape of giga-genome and the epigenetic timer of age in Chinese pine

DNA methylation level declines during aging of mammals. Here, the authors report single-base resolution landscape of cytosine DNA methylation at different ages of Chinese pine and show that the global cytosine DNA methylation gradually increases as age progresses