Crop Updates 2000 Cereals - part 4

This session covers twelve papers from different authors: BREEDING 1.Response to subsoil acidity of wheat genotypes differing in Al-tolerance, C. Tang, Z. Rengel, E. Diatloff and B. McGann, Soil Science and Plant Nutrition/CLIMA, University of Western Australia 2. Application of molecular markers in Barley Improvement, Mehmet Cakir1, Nick Galwey1 and David Poulsen2, 1Plant Sciences, Faculty of Agriculture, University of Western Australia, 2Queensland Department of Primary Industries, Hermitage Research Station, Queensland 3. Implementation of molecular markers for wheat improvement in the Western Region, M. Carter1, A. Briney1, R. Wilson2, R.H. Potter1 and M.G.K. Jones1, 1Western Australian State Agricultural Biotechnology Centre, Murdoch University, 2Crop Industries, Agriculture Western Australia 4. Performance in 1999 of recently released wheat varieties in Western Australia, Robin Wilson, Iain Barclay, Robyn McLean, Dean Diepeveen and Robert Loughman, Agriculture Western Australia ECONOMICS 5. Outlook for prices and implications for rotations, Ross Kingwell1 2, Michael O’Connell1, Simone Blennerhasset1 1Agriculture Western Australia, 2University of Western Australia 6. Price Risk Management and the Western Australian Grain Producer, Benjamin Michael Tiller, Muresk Institute of Agriculture FORECASTING 7. Can we forecast wheat yields in Western Australia, Senthold Asseng1, Holger Meinke2, and Bill Bowden3, 1CSIRO Plant Industry, 2 APSRU/DPI, 3Agriculture Western Australia ON FARM TESTING 8. On-farm testing, the quiet revolution continues, Jeff Russell1, Ivan Lee2 1Agriculture Western Australia, 2 Farmer Kunjin TopCrop group, Corrigin GRAIN STORAGE 9. CD-ROM tool for growers and advisers: Managing on-farm grain storage – effective practices for the delivery of quality assured products, Clare Johnson1, Chris Newman2 1Quality Wheat CRC Ltd, 2Production Resource Protection Services, Agriculture Western Australia 10. The Internet as a tool for managing grain insects, Robert Emery, Romolo Tassone and Ernestos Kostas, Agriculture Western Australia SUMMER CROPS AND WINDBREAK EFFECT ON YIELD 11. Summer crop Update and agronomic considerations, Graeme Ralph, Pioneer Hi-Bred Australia Pty Ltd 12. The effect of tree windbreaks on grain yield in the medium and low rainfall areas in Western Australia, Robert Sudmeyer, David Hall and Harvey Jones, Agriculture Western Australi

Special phase transformation and crystal growth pathways observed in nanoparticles†

Phase transformation and crystal growth in nanoparticles may happen via mechanisms distinct from those in bulk materials. We combine experimental studies of as-synthesized and hydrothermally coarsened titania (TiO(2)) and zinc sulfide (ZnS) with thermodynamic analysis, kinetic modeling and molecular dynamics (MD) simulations. The samples were characterized by transmission electron microscopy, X-ray diffraction, synchrotron X-ray absorption and scattering, and UV-vis spectroscopy. At low temperatures, phase transformation in titania nanoparticles occurs predominantly via interface nucleation at particle–particle contacts. Coarsening and crystal growth of titania nanoparticles can be described using the Smoluchowski equation. Oriented attachment-based crystal growth was common in both hydrothermal solutions and under dry conditions. MD simulations predict large structural perturbations within very fine particles, and are consistent with experimental results showing that ligand binding and change in aggregation state can cause phase transformation without particle coarsening. Such phenomena affect surface reactivity, thus may have important roles in geochemical cycling

Atypical and classical memory B cells produce Plasmodium falciparum neutralizing antibodies

Antibodies can protect from Plasmodium falciparum (Pf) infection and clinical malaria disease. However, in the absence of constant reexposure, serum immunoglobulin (Ig) levels rapidly decline and full protection from clinical symptoms is lost, suggesting that B cell memory is functionally impaired. We show at the single cell level that natural Pf infection induces the development of classical memory B cells (CM) and atypical memory B cells (AtM) that produce broadly neutralizing antibodies against blood stage Pf parasites. CM and AtM contribute to anti-Pf serum IgG production, but only AtM show signs of active antibody secretion. AtM and CM were also different in their IgG gene repertoire, suggesting that they develop from different precursors. The findings provide direct evidence that natural Pf infection leads to the development of protective memory B cell antibody responses and suggest that constant immune activation rather than impaired memory function leads to the accumulation of AtM in malaria. Understanding the memory B cell response to natural Pf infection may be key to the development of a malaria vaccine that induces long-lived protection

Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function

BACKGROUND: Understanding the genetic architecture of cardiac structure and function may help to prevent and treat heart disease. This investigation sought to identify common genetic variations associated with inter-individual variability in cardiac structure and function. METHODS: A GWAS meta-analysis of echocardiographic traits was performed, including 46,533 individuals from 30 studies (EchoGen consortium). The analysis included 16 traits of left ventricular (LV) structure, and systolic and diastolic function. RESULTS: The discovery analysis included 21 cohorts for structural and systolic function traits (n = 32,212) and 17 cohorts for diastolic function traits (n = 21,852). Replication was performed in 5 cohorts (n = 14,321) and 6 cohorts (n = 16,308), respectively. Besides 5 previously reported loci, the combined meta-analysis identified 10 additional genome-wide significant SNPs: rs12541595 near MTSS1 and rs10774625 in ATXN2 for LV end-diastolic internal dimension; rs806322 near KCNRG, rs4765663 in CACNA1C, rs6702619 near PALMD, rs7127129 in TMEM16A, rs11207426 near FGGY, rs17608766 in GOSR2, and rs17696696 in CFDP1 for aortic root diameter; and rs12440869 in IQCH for Doppler transmitral A-wave peak velocity. Findings were in part validated in other cohorts and in GWAS of related disease traits. The genetic loci showed associations with putative signaling pathways, and with gene expression in whole blood, monocytes, and myocardial tissue. CONCLUSION: The additional genetic loci identified in this large meta-analysis of cardiac structure and function provide insights into the underlying genetic architecture of cardiac structure and warrant follow-up in future functional studies. FUNDING: For detailed information per study, see Acknowledgments.This work was supported by a grant from the US National Heart, Lung, and Blood Institute (N01-HL-25195; R01HL 093328 to RSV), a MAIFOR grant from the University Medical Center Mainz, Germany (to PSW), the Center for Translational Vascular Biology (CTVB) of the Johannes Gutenberg-University of Mainz, and the Federal Ministry of Research and Education, Germany (BMBF 01EO1003 to PSW). This work was also supported by the research project Greifswald Approach to Individualized Medicine (GANI_MED). GANI_MED was funded by the Federal Ministry of Education and Research and the Ministry of Cultural Affairs of the Federal State of Mecklenburg, West Pomerania (contract 03IS2061A). We thank all study participants, and the colleagues and coworkers from all cohorts and sites who were involved in the generation of data or in the analysis. We especially thank Andrew Johnson (FHS) for generation of the gene annotation database used for analysis. We thank the German Center for Cardiovascular Research (DZHK e.V.) for supporting the analysis and publication of this project. RSV is a member of the Scientific Advisory Board of the DZHK. Data on CAD and MI were contributed by CARDIoGRAMplusC4D investigators. See Supplemental Acknowledgments for consortium details. PSW, JFF, AS, AT, TZ, RSV, and MD had full access to all of the data in the study and take responsibility for the integrity of the data and the accuracy of the data analysis

Crop Updates 2000 Cereals - part 4

This session covers twelve papers from different authors: BREEDING 1.Response to subsoil acidity of wheat genotypes differing in Al-tolerance, C. Tang, Z. Rengel, E. Diatloff and B. McGann, Soil Science and Plant Nutrition/CLIMA, University of Western Australia 2. Application of molecular markers in Barley Improvement, Mehmet Cakir1, Nick Galwey1 and David Poulsen2, 1Plant Sciences, Faculty of Agriculture, University of Western Australia, 2Queensland Department of Primary Industries, Hermitage Research Station, Queensland 3. Implementation of molecular markers for wheat improvement in the Western Region, M. Carter1, A. Briney1, R. Wilson2, R.H. Potter1 and M.G.K. Jones1, 1Western Australian State Agricultural Biotechnology Centre, Murdoch University, 2Crop Industries, Agriculture Western Australia 4. Performance in 1999 of recently released wheat varieties in Western Australia, Robin Wilson, Iain Barclay, Robyn McLean, Dean Diepeveen and Robert Loughman, Agriculture Western Australia ECONOMICS 5. Outlook for prices and implications for rotations, Ross Kingwell1 2, Michael O’Connell1, Simone Blennerhasset1 1Agriculture Western Australia, 2University of Western Australia 6. Price Risk Management and the Western Australian Grain Producer, Benjamin Michael Tiller, Muresk Institute of Agriculture FORECASTING 7. Can we forecast wheat yields in Western Australia, Senthold Asseng1, Holger Meinke2, and Bill Bowden3, 1CSIRO Plant Industry, 2 APSRU/DPI, 3Agriculture Western Australia ON FARM TESTING 8. On-farm testing, the quiet revolution continues, Jeff Russell1, Ivan Lee2 1Agriculture Western Australia, 2 Farmer Kunjin TopCrop group, Corrigin GRAIN STORAGE 9. CD-ROM tool for growers and advisers: Managing on-farm grain storage – effective practices for the delivery of quality assured products, Clare Johnson1, Chris Newman2 1Quality Wheat CRC Ltd, 2Production Resource Protection Services, Agriculture Western Australia 10. The Internet as a tool for managing grain insects, Robert Emery, Romolo Tassone and Ernestos Kostas, Agriculture Western Australia SUMMER CROPS AND WINDBREAK EFFECT ON YIELD 11. Summer crop Update and agronomic considerations, Graeme Ralph, Pioneer Hi-Bred Australia Pty Ltd 12. The effect of tree windbreaks on grain yield in the medium and low rainfall areas in Western Australia, Robert Sudmeyer, David Hall and Harvey Jones, Agriculture Western Australi

Pathogenic variants in KMT2C result in a neurodevelopmental disorder distinct from Kleefstra and Kabuki syndromes

Trithorax-related H3K4 methyltransferases, KMT2C and KMT2D, are critical epigenetic modifiers. Haploinsufficiency of KMT2C was only recently recognized as a cause of neurodevelopmental disorder (NDD), so the clinical and molecular spectrums of the KMT2C-related NDD (now designated as Kleefstra syndrome 2) are largely unknown. We ascertained 98 individuals with rare KMT2C variants, including 75 with protein-truncating variants (PTVs). Notably, ∼15% of KMT2C PTVs were inherited. Although the most highly expressed KMT2C transcript consists of only the last four exons, pathogenic PTVs were found in almost all the exons of this large gene. KMT2C variant interpretation can be challenging due to segmental duplications and clonal hematopoesis-induced artifacts. Using samples from 27 affected individuals, divided into discovery and validation cohorts, we generated a moderate strength disorder-specific KMT2C DNA methylation (DNAm) signature and demonstrate its utility in classifying non-truncating variants. Based on 81 individuals with pathogenic/likely pathogenic variants, we demonstrate that the KMT2C-related NDD is characterized by developmental delay, intellectual disability, behavioral and psychiatric problems, hypotonia, seizures, short stature, and other comorbidities. The facial module of PhenoScore, applied to photographs of 34 affected individuals, reveals that the KMT2C-related facial gestalt is significantly different from the general NDD population. Finally, using PhenoScore and DNAm signatures, we demonstrate that the KMT2C-related NDD is clinically and epigenetically distinct from Kleefstra and Kabuki syndromes. Overall, we define the clinical features, molecular spectrum, and DNAm signature of the KMT2C-related NDD and demonstrate they are distinct from Kleefstra and Kabuki syndromes highlighting the need to rename this condition.</p

Pathogenic variants in KMT2C result in a neurodevelopmental disorder distinct from Kleefstra and Kabuki syndromes

Trithorax-related H3K4 methyltransferases, KMT2C and KMT2D, are critical epigenetic modifiers. Haploinsufficiency of KMT2C was only recently recognized as a cause of neurodevelopmental disorder (NDD), so the clinical and molecular spectrums of the KMT2C-related NDD (now designated as Kleefstra syndrome 2) are largely unknown. We ascertained 98 individuals with rare KMT2C variants, including 75 with protein-truncating variants (PTVs). Notably, ∼15% of KMT2C PTVs were inherited. Although the most highly expressed KMT2C transcript consists of only the last four exons, pathogenic PTVs were found in almost all the exons of this large gene. KMT2C variant interpretation can be challenging due to segmental duplications and clonal hematopoesis-induced artifacts. Using samples from 27 affected individuals, divided into discovery and validation cohorts, we generated a moderate strength disorder-specific KMT2C DNA methylation (DNAm) signature and demonstrate its utility in classifying non-truncating variants. Based on 81 individuals with pathogenic/likely pathogenic variants, we demonstrate that the KMT2C-related NDD is characterized by developmental delay, intellectual disability, behavioral and psychiatric problems, hypotonia, seizures, short stature, and other comorbidities. The facial module of PhenoScore, applied to photographs of 34 affected individuals, reveals that the KMT2C-related facial gestalt is significantly different from the general NDD population. Finally, using PhenoScore and DNAm signatures, we demonstrate that the KMT2C-related NDD is clinically and epigenetically distinct from Kleefstra and Kabuki syndromes. Overall, we define the clinical features, molecular spectrum, and DNAm signature of the KMT2C-related NDD and demonstrate they are distinct from Kleefstra and Kabuki syndromes highlighting the need to rename this condition