Trait Evolution in Adaptive Radiations: Modeling and Measuring Interspecific Competition on Phylogenies

The incorporation of ecological processes into models of trait evolution is important for understanding past drivers of evolutionary change. Species interactions have long been thought to be key drivers of trait evolution. However, models for comparative data that account for interactions between species are lacking. One of the challenges is that such models are intractable and difficult to express analytically. Here we present phylogenetic models of trait evolution that include interspecific competition among chosen species. Competition is modeled as a tendency of sympatric species to evolve toward difference from one another, producing trait overdispersion and high phylogenetic signal. The model predicts elevated trait variance across species and a slowdown in evolutionary rate both across the clade and within each branch. The model also predicts a reduction in correlation between otherwise correlated traits. We use an approximate Bayesian computation approach to estimate model parameters. We find reasonable power to detect competition in sufficiently large (20+ species) trees compared with Brownian trait evolution and with Ornstein-Uhlenbeck and early burst models. We apply the model to examine the evolution of bill morphology of Darwin’s finches and find evidence that competition affects the evolution of bill length

Structure of cellulose microfibrils in primary cell-walls from collenchyma

In the primary walls of growing plant cells, the glucose polymer cellulose is assembled into long microfibrils a few nanometers in diameter. The rigidity and orientation of these microfibrils control cell expansion; therefore, cellulose synthesis is a key factor in the growth and morphogenesis of plants. Celery (Apium graveolens) collenchyma is a useful model system for the study of primary wall microfibril structure because its microfibrils are oriented with unusual uniformity, facilitating spectroscopic and diffraction experiments. Using a combination of x-ray and neutron scattering methods with vibrational and nuclear magnetic resonance spectroscopy, we show that celery collenchyma microfibrils were 2.9 to 3.0 nm in mean diameter, with a most probable structure containing 24 chains in cross section, arranged in eight hydrogen-bonded sheets of three chains, with extensive disorder in lateral packing, conformation, and hydrogen bonding. A similar 18-chain structure, and 24-chain structures of different shape, fitted the data less well. Conformational disorder was largely restricted to the surface chains, but disorder in chain packing was not. That is, in position and orientation, the surface chains conformed to the disordered lattice constituting the core of each microfibril. There was evidence that adjacent microfibrils were noncovalently aggregated together over part of their length, suggesting that the need to disrupt these aggregates might be a constraining factor in growth and in the hydrolysis of cellulose for biofuel production

Psychopathology in police custody: The role of importation, deprivation and interaction models

People experiencing mental illness are over-represented among police cell detainees, however limited work has sought to investigate the occurrence of psychopathology in police custody. The present study sought to examine the predictive power of personal factors (e.g., history of psychiatric hospitalisation), situational factors (e.g., police cell conditions), and their interactive effects to explain the occurrence of psychopathology in police custody. A total of 150 detainees were recruited from two metropolitan police stations in Melbourne, Australia. Personal factors were significantly associated with psychiatric symptomatology, with situational factors and interaction terms yielding no association. Detainees with preexisting vulnerabilities and those unsatisfied with police cell conditions demonstrated the highest levels of psychopathology. While all detainees experience some difficulties in police cells, it is those with pre-existing vulnerabilities that suffer the most. This may be due to the exacerbation of vulnerabilities by police cell conditions. The implications of these findings for provision of health care services in police cells are discussed

Lattice Point Generating Functions and Symmetric Cones

We show that a recent identity of Beck-Gessel-Lee-Savage on the generating function of symmetrically contrained compositions of integers generalizes naturally to a family of convex polyhedral cones that are invariant under the action of a finite reflection group. We obtain general expressions for the multivariate generating functions of such cones, and work out the specific cases of a symmetry group of type A (previously known) and types B and D (new). We obtain several applications of the special cases in type B, including identities involving permutation statistics and lecture hall partitions.Comment: 19 page

Yang-Mills, Gravity, and String Symmetries

In this work we use constructs from the dual space of the semi-direct product of the Virasoro algebra and the affine Lie algebra of a circle to write a theory of gravitation which is a natural analogue of Yang-Mills theory. The theory provides a relation between quadratic differentials in 1+1 dimensions and rank two symmetric tensors in higher dimensions as well as a covariant local Lagrangian for two dimensional gravity. The isotropy equations of coadjoint orbits are interpreted as Gauss law constraints for a field theory in two dimensions, which enables us to extend to higher dimensions. The theory has a Newtonian limit in any space-time dimension. Our approach introduces a novel relationship between string theories and 2D field theories that might be useful in defining dual theories. We briefly discuss how this gravitational field couples to fermions.Comment: To Appear in Phys. Lett. B, In memory of Emma Meuric

Weeds in wheat - response to fallow frequency, legume green manure, and wheat class

Non-Peer Reviewe

Correlates of criminal victimisation among police cell detainees in Victoria, Australia

People with mental illness are more likely to be crime victims than others; however, little is known about the relationship between offending and victimisation among mentally ill offenders. This study investigated the rates and types of victimisation among people detained in police cells (N = 764), with and without histories of mental illness. Those with mental disorders were 1.56 times (95% CI = 1.11–2.17) more likely to be victims of violent crimes than other detainees. Some subgroups of people with mental disorders were not over-represented as victims, raising the possibility that they were less inclined to report certain types of crimes. Implications are discussed with reference to police practice

Economics of integrated crop management systems in the Dark Brown Soil Zone

Non-Peer ReviewedLow commodity prices, rising input costs, and increasing concerns about environmental degradation are encouraging producers in western Canada to consider alternative soil tillage and weed management methods that conserve resource inputs. However, little is known about the economic merits of these management changes. This study determines the effects of six integrated soil, cultural, and weed management practices on production costs, economic returns, and riskiness for a Wheat (W)-Canola (C)-Barley (B)-Pea (P) rotation in the Dark Brown Soil Zone of Saskatchewan

Energy efficiency of integrated crop management systems in the Dark Brown Soil Zone

Non-Peer Reviewe

Actors that Unify Threads and Events

There is an impedance mismatch between message-passing concurrency and virtual machines, such as the JVM. VMs usually map their threads to heavyweight OS processes. Without a lightweight process abstraction, users are often forced to write parts of concurrent applications in an event-driven style which obscures control flow, and increases the burden on the programmer. In this paper we show how thread-based and event-based programming can be unified under a single actor abstraction. Using advanced abstraction mechanisms of the Scala programming language, we implemented our approach on unmodified JVMs. Our programming model integrates well with the threading model of the underlying VM